Zinc in PDB, part 503 (files: 20081-20120),
PDB 8dvr-8e6z
Experimental structures of coordination spheres of Zinc (Zn) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Zinc atoms. PDB files: 20081-20120 (PDB 8dvr-8e6z).
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8dvr (Zn: 1) - Cryo-Em Structure of Rig-I Bound to the End of P3SLR30 (+Amppnp)
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8dvs (Zn: 1) - Cryo-Em Structure of Rig-I Bound to the End of OHSLR30 (+Atp)
Other atoms:
Mg (1);
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8dvu (Zn: 1) - Cryo-Em Structure of Rig-I Bound to the Internal Sites of OHSLR30 (+Atp)
Other atoms:
Mg (1);
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8dw6 (Zn: 1) - T4 Bacteriophage Primosome with Single-Strand Dna, State 3
Other atoms:
Mg (5);
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8dwj (Zn: 1) - Primase of Mutant Bacteriophage T4 Primosome with Single Strand Dna/Rna Primer Hybrid in Primer Exiting State
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8dwl (Zn: 4) - Inhibitor-3:PP1 Coexpressed Complex
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8dy7 (Zn: 3) - Streptomyces Venezuelae Rnap Transcription Open Promoter Complex with Whia and Whib Transcription Factors
Other atoms:
Mg (1);
Fe (4);
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8dy9 (Zn: 3) - Streptomyces Venezuelae Rnap Unconstrained Open Promoter Complex with Whia and Whib Transcription Factors
Other atoms:
Mg (1);
Fe (4);
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8dyq (Zn: 4) - Crystal Structure of Neisseria Gonorrhoeae Carbonic Anhydrase with Acetazolamide
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8dze (Zn: 6) - Cryo-Em Structure of Bundle-Forming Pilus Extension Atpase From E. Coli in the Presence of Amp-Pnp (Class-1)
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8dzf (Zn: 6) - Cryo-Em Structure of Bundle-Forming Pilus Extension Atpase From E.Coli in the Presence of Amp-Pnp (Class-2)
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8dzg (Zn: 6) - Cryo-Em Structure of Bundle-Forming Pilus Extension Atpase From E.Coli in the Presence of Adp
Other atoms:
Mg (6);
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8dzj (Zn: 1) - Cryo-Em Structure of Acidibacillus Sulfuroxidans CAS12F in Complex with Sgrna and Target Dna
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8dzk (Zn: 5) - DBR1 in Complex with 5-Mer Cleavage Product
Other atoms:
Fe (5);
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8e0f (Zn: 2) - Human Adenosine Deaminase Acting on Dsrna (ADAR2-Rd) Bound to Dsrna Containing A G-G Pair Adjacent to the Target Site
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8e0q (Zn: 6) - Structure of the Human UBR5 Hect-Type E3 Ubiquitin Ligase in A C2 Symmetric Dimeric Form
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8e14 (Zn: 2) - Cryo-Em Structure of Rous Sarcoma Virus Strand Transfer Complex
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8e1d (Zn: 60) - uc(Nmr)-Derived Ensemble of the TAZ2 Domain of P300 Bound to the Microphthalmia-Associated Transcription Factor
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8e2p (Zn: 4) - Crystal Structure of Tada*8.20 in A Complex with Ssdna
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8e2q (Zn: 4) - Crystal Structure of Tadac-1.17 in A Complex with Ssdna
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8e2r (Zn: 2) - Crystal Structure of Tadac-1.14
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8e2s (Zn: 8) - Crystal Structure of Tadac-1.19
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8e3d (Zn: 12) - ZBTB7A Zinc Finger Domain Bound to Dna Duplex Containing Cast Sequence (#11)
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8e3e (Zn: 12) - ZBTB7A Zinc Finger Domain Bound to Dna Duplex Containing Cast Sequence (#10)
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8e3f (Zn: 2) - Escherichia Coli Rho-Dependent Transcription Pre-Termination Complex Containing 18 Nt Long Rna Spacer, Mg-Adp-BEF3, and Nusg; Tec Part
Other atoms:
Mg (1);
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8e3i (Zn: 3) - Cryo-Em Structure of the Human Mpsf in Complex with the Auuaaa Poly(A) Signal
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8e3q (Zn: 1) - Cryo-Em Structure of the Human Mpsf
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8e3s (Zn: 1) - Cryoem Structure of Yeast Arginyltransferase 1 (ATE1)
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8e40 (Zn: 2) - Full-Length APOBEC3G in Complex with Hiv-1 Vif, Cbf-Beta, and Fork Rna
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8e4a (Zn: 1) - Pseudomonas Lpxc in Complex with Lpc-233
Other atoms:
F (2);
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8e4x (Zn: 2) - Human Adenosine Deaminase Acting on Dsrna (ADAR2-R2D) Bound to Dsrna Containing A G:3-Deaza Da Pair Adjacent to the Target Site
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8e5d (Zn: 1) - Crystal Structure of Double-Stranded Dna Deaminase Toxin Ddda in Complex with Dna with the Target Cytosine Parked in the Major Groove
Other atoms:
Mg (1);
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8e5e (Zn: 1) - Crystal Structure of Double-Stranded Dna Deaminase Toxin Ddda in Complex with Dna with the Target Cytosine Flipped Into the Active Site
Other atoms:
Mg (1);
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8e5k (Zn: 2) - Escherichia Coli Rho-Dependent Transcription Pre-Termination Complex Containing 21 Nt Long Rna Spacer, Mg-Adp-BEF3, and Nusg; Tec Part
Other atoms:
Mg (1);
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8e5o (Zn: 2) - Escherichia Coli Rho-Dependent Transcription Pre-Termination Complex Containing 24 Nt Long Rna Spacer, Mg-Adp-BEF3, and Nusg; Tec Part
Other atoms:
Mg (1);
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8e5t (Zn: 1) - Yeast Co-Transcriptional NOC1-NOC2 Rnp Assembly Checkpoint Intermediate
Other atoms:
Mg (33);
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8e6s (Zn: 4) - Human TRPM2 Ion Channel in 1 Mm Dadpr and CA2+
Other atoms:
Ca (4);
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8e6v (Zn: 1) - MHR1/2 and NUDT9H of Human TRPM2 in 1 Mm Dadpr (Local Refinement)
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8e6x (Zn: 2) - Escherichia Coli Rho-Dependent Transcription Pre-Termination Complex Containing 18 Nt Long Rna Spacer, Lambda-TR1 Rut Rna, Mg-Adp-BEF3, and Nusg; Tec Part
Other atoms:
Mg (1);
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8e6z (Zn: 2) - Escherichia Coli Rho-Dependent Transcription Pre-Termination Complex Containing 18 Nt Long Rna Spacer, DC75 Rut Mimic Rna, Mg-Adp-BEF3, and Nusg; Tec Part
Other atoms:
Mg (1);
Page generated: Tue Feb 25 12:10:05 2025
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