Zinc in PDB 8dvr: Cryo-Em Structure of Rig-I Bound to the End of P3SLR30 (+Amppnp)

All present enzymatic activity of Cryo-Em Structure of Rig-I Bound to the End of P3SLR30 (+Amppnp):
3.6.4.13;

The binding sites of Zinc atom in the Cryo-Em Structure of Rig-I Bound to the End of P3SLR30 (+Amppnp) (pdb code 8dvr). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Cryo-Em Structure of Rig-I Bound to the End of P3SLR30 (+Amppnp), PDB code: 8dvr:

Zinc binding site 1 out of 1 in the Cryo-Em Structure of Rig-I Bound to the End of P3SLR30 (+Amppnp)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Rig-I Bound to the End of P3SLR30 (+Amppnp) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1001 b:37.0 occ:1.00 SG A:CYS864 2.5 26.9 1.0 SG A:CYS810 2.5 29.8 1.0 CB A:CYS813 2.6 30.6 1.0 CB A:CYS810 2.8 29.8 1.0 SG A:CYS869 2.8 32.1 1.0 SG A:CYS813 3.3 30.6 1.0 CB A:CYS864 3.6 26.9 1.0 CA A:CYS813 3.8 30.6 1.0 CB A:CYS869 3.9 32.1 1.0 N A:CYS813 4.0 30.6 1.0 CG A:ARG866 4.2 37.1 1.0 CZ2 A:TRP873 4.2 22.6 1.0 CA A:CYS810 4.3 29.8 1.0 C A:CYS813 4.5 30.6 1.0 NE1 A:TRP873 4.5 22.6 1.0 CB A:ALA815 4.6 30.4 1.0 N A:LYS814 4.7 30.2 1.0 CE2 A:TRP873 4.7 22.6 1.0 CB A:ARG866 4.8 37.1 1.0 N A:ALA815 4.8 30.4 1.0 CB A:HIS871 4.9 24.2 1.0 C A:LYS812 5.0 28.4 1.0 C A:CYS810 5.0 29.8 1.0

W.Wang, A.M.Pyle. The Rig-I Receptor Adopts Two Different Conformations For Distinguishing Host From Viral Rna Ligands. Mol.Cell V. 82 4131 2022.
ISSN: ISSN 1097-2765
PubMed: 36272408
DOI: 10.1016/J.MOLCEL.2022.09.029