Zinc in PDB 8e5t: Yeast Co-Transcriptional NOC1-NOC2 Rnp Assembly Checkpoint Intermediate

All present enzymatic activity of Yeast Co-Transcriptional NOC1-NOC2 Rnp Assembly Checkpoint Intermediate:
3.6.4.13;

The structure of Yeast Co-Transcriptional NOC1-NOC2 Rnp Assembly Checkpoint Intermediate also contains other interesting chemical elements:

Magnesium

(Mg)

33 atoms

The binding sites of Zinc atom in the Yeast Co-Transcriptional NOC1-NOC2 Rnp Assembly Checkpoint Intermediate (pdb code 8e5t). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Yeast Co-Transcriptional NOC1-NOC2 Rnp Assembly Checkpoint Intermediate, PDB code: 8e5t:

Zinc binding site 1 out of 1 in the Yeast Co-Transcriptional NOC1-NOC2 Rnp Assembly Checkpoint Intermediate


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Yeast Co-Transcriptional NOC1-NOC2 Rnp Assembly Checkpoint Intermediate within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn401 b:101.4 occ:1.00 SG D:CYS28 2.1 98.2 1.0 SG D:CYS38 2.1 102.0 1.0 SG D:CYS43 2.1 92.1 1.0 SG D:CYS15 2.1 99.8 1.0 CB D:CYS38 3.4 102.0 1.0 CB D:CYS15 3.7 99.8 1.0 CB D:CYS28 3.8 98.2 1.0 CB D:CYS43 3.9 92.1 1.0 CG2 D:ILE10 4.0 93.7 1.0 CA D:CYS38 4.2 102.0 1.0 NH2 D:ARG18 4.4 101.6 1.0 CZ D:ARG18 4.4 101.6 1.0 NH1 D:ARG18 4.6 101.6 1.0 CB D:ARG18 4.8 101.6 1.0 CA D:CYS28 4.8 98.2 1.0 CA D:CYS43 4.8 92.1 1.0 NE D:ARG18 4.8 101.6 1.0 ND2 D:ASN30 4.9 93.2 1.0

Z.A.Sanghai, R.Piwowarczyk, A.Vanden Broeck, S.Klinge. A Co-Transcriptional Ribosome Assembly Checkpoint Controls Nascent Large Ribosomal Subunit Maturation Nat.Struct.Mol.Biol. 2023.
ISSN: ESSN 1545-9985
DOI: 10.1038/S41594-023-00947-3