Zinc in PDB 9ir3: Cryo-Em Structure of Nipah Virus L-P Polymerase Complex

All present enzymatic activity of Cryo-Em Structure of Nipah Virus L-P Polymerase Complex:
2.1.1.375; 2.7.7.48; 2.7.7.88;

The binding sites of Zinc atom in the Cryo-Em Structure of Nipah Virus L-P Polymerase Complex (pdb code 9ir3). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Cryo-Em Structure of Nipah Virus L-P Polymerase Complex, PDB code: 9ir3:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Cryo-Em Structure of Nipah Virus L-P Polymerase Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Nipah Virus L-P Polymerase Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn2301 b:77.5 occ:1.00 NE2 A:HIS1423 2.0 70.1 1.0 ND1 A:HIS1421 2.0 68.0 1.0 SG A:CYS1239 2.3 76.4 1.0 SG A:CYS1236 2.3 80.0 1.0 CB A:CYS1236 2.8 80.0 1.0 CE1 A:HIS1423 2.8 70.1 1.0 CG A:HIS1421 3.0 68.0 1.0 CE1 A:HIS1421 3.0 68.0 1.0 CD2 A:HIS1423 3.2 70.1 1.0 CB A:HIS1421 3.3 68.0 1.0 CB A:CYS1239 3.6 76.4 1.0 N A:CYS1239 4.0 76.4 1.0 ND1 A:HIS1423 4.0 70.1 1.0 NE2 A:HIS1421 4.1 68.0 1.0 CD2 A:HIS1421 4.1 68.0 1.0 CG A:HIS1423 4.2 70.1 1.0 CA A:CYS1239 4.3 76.4 1.0 CA A:CYS1236 4.3 80.0 1.0 CD1 A:ILE1230 4.5 68.7 1.0 CB A:ILE1238 4.8 74.2 1.0 CA A:HIS1421 4.8 68.0 1.0 C A:ILE1238 4.9 74.2 1.0 C A:CYS1236 4.9 80.0 1.0

Zinc binding site 2 out of 2 in the Cryo-Em Structure of Nipah Virus L-P Polymerase Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of Nipah Virus L-P Polymerase Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn2302 b:117.8 occ:1.00 O A:CYS1428 2.1 91.7 1.0 SG A:CYS1429 2.3 92.3 1.0 SG A:CYS1191 2.4 73.7 1.0 C A:CYS1428 2.7 91.7 1.0 SG A:CYS1428 2.9 91.7 1.0 CB A:CYS1191 3.1 73.7 1.0 N A:CYS1429 3.4 92.3 1.0 CB A:CYS1429 3.5 92.3 1.0 CA A:CYS1428 3.5 91.7 1.0 CA A:CYS1429 3.7 92.3 1.0 CB A:CYS1428 3.8 91.7 1.0 CA A:CYS1191 4.0 73.7 1.0 CG A:GLU1223 4.4 76.0 1.0 CD A:GLU1223 4.6 76.0 1.0 OE1 A:GLU1223 4.6 76.0 1.0 N A:SER1192 4.8 71.6 1.0 N A:CYS1428 4.9 91.7 1.0 C A:CYS1191 5.0 73.7 1.0 N A:CYS1191 5.0 73.7 1.0

Y.Shi, Q.Peng. Cryo-Em Structure of Nipah Virus L-P Polymerase Complex To Be Published.