Zinc in PDB 8dwj: Primase of Mutant Bacteriophage T4 Primosome with Single Strand Dna/Rna Primer Hybrid in Primer Exiting State

The binding sites of Zinc atom in the Primase of Mutant Bacteriophage T4 Primosome with Single Strand Dna/Rna Primer Hybrid in Primer Exiting State (pdb code 8dwj). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Primase of Mutant Bacteriophage T4 Primosome with Single Strand Dna/Rna Primer Hybrid in Primer Exiting State, PDB code: 8dwj:

Zinc binding site 1 out of 1 in the Primase of Mutant Bacteriophage T4 Primosome with Single Strand Dna/Rna Primer Hybrid in Primer Exiting State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Primase of Mutant Bacteriophage T4 Primosome with Single Strand Dna/Rna Primer Hybrid in Primer Exiting State within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:253.2 occ:1.00 SG A:CYS40 2.5 251.4 1.0 SG A:CYS37 2.5 234.3 1.0 SG A:CYS65 2.5 220.0 1.0 SG A:CYS68 2.5 211.9 1.0 CB A:CYS37 2.7 234.3 1.0 CB A:CYS40 3.5 251.4 1.0 CB A:CYS65 3.6 220.0 1.0 CB A:CYS68 3.7 211.9 1.0 N A:CYS40 3.8 251.4 1.0 N A:CYS68 3.9 211.9 1.0 OD1 A:ASP42 4.0 245.8 1.0 CA A:CYS37 4.1 234.3 1.0 CA A:CYS40 4.2 251.4 1.0 CB A:ASN67 4.2 221.4 1.0 O A:CYS37 4.3 234.3 1.0 C A:CYS37 4.4 234.3 1.0 CA A:CYS68 4.5 211.9 1.0 CB A:VAL39 4.6 241.5 1.0 N A:CYS37 4.8 234.3 1.0 C A:VAL39 4.8 241.5 1.0 CG A:ASP42 4.8 245.8 1.0 C A:ASN67 4.8 221.4 1.0 N A:GLY41 4.9 255.4 1.0 N A:VAL39 4.9 241.5 1.0 CA A:ASN67 4.9 221.4 1.0 C A:CYS40 4.9 251.4 1.0 CA A:CYS65 5.0 220.0 1.0 N A:ASN67 5.0 221.4 1.0 N A:ASP42 5.0 245.8 1.0

X.Feng, M.M.Spiering, R.De Luna Almeida Santos, S.J.Benkovic, H.Li. Structural Basis of the T4 Bacteriophage Primosome Assembly and Primer Synthesis. Biorxiv 2023.
ISSN: ISSN 2692-8205
PubMed: 37205424
DOI: 10.1101/2023.05.03.539249