Zinc in PDB 8dy9: Streptomyces Venezuelae Rnap Unconstrained Open Promoter Complex with Whia and Whib Transcription Factors

All present enzymatic activity of Streptomyces Venezuelae Rnap Unconstrained Open Promoter Complex with Whia and Whib Transcription Factors:
2.7.7.6;

The structure of Streptomyces Venezuelae Rnap Unconstrained Open Promoter Complex with Whia and Whib Transcription Factors also contains other interesting chemical elements:

Magnesium	(Mg)	1 atom
Iron	(Fe)	4 atoms

The binding sites of Zinc atom in the Streptomyces Venezuelae Rnap Unconstrained Open Promoter Complex with Whia and Whib Transcription Factors (pdb code 8dy9). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Streptomyces Venezuelae Rnap Unconstrained Open Promoter Complex with Whia and Whib Transcription Factors, PDB code: 8dy9:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in the Streptomyces Venezuelae Rnap Unconstrained Open Promoter Complex with Whia and Whib Transcription Factors


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Streptomyces Venezuelae Rnap Unconstrained Open Promoter Complex with Whia and Whib Transcription Factors within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn2000 b:85.8 occ:1.00 SG D:CYS972 2.3 57.0 1.0 SG D:CYS886 2.3 63.8 1.0 SG D:CYS969 2.3 57.3 1.0 SG D:CYS962 2.3 62.7 1.0 HB2 D:CYS972 3.1 57.0 1.0 HB3 D:CYS886 3.1 63.8 1.0 HH21 D:ARG957 3.2 62.4 1.0 CB D:CYS886 3.4 63.8 1.0 CB D:CYS972 3.4 57.0 1.0 HA D:CYS962 3.4 62.7 1.0 H D:CYS886 3.4 63.8 1.0 HB3 D:CYS969 3.5 57.3 1.0 CB D:CYS962 3.6 62.7 1.0 CB D:CYS969 3.6 57.3 1.0 HB2 D:SER964 3.7 64.3 1.0 HB2 D:CYS962 3.7 62.7 1.0 H D:CYS969 3.8 57.3 1.0 HG21 D:THR888 3.8 67.6 1.0 H D:CYS972 3.8 57.0 1.0 H D:GLU963 3.9 67.5 1.0 NH2 D:ARG957 3.9 62.4 1.0 H D:SER964 3.9 64.3 1.0 CA D:CYS962 4.0 62.7 1.0 HB3 D:CYS972 4.0 57.0 1.0 HG22 D:THR888 4.0 67.6 1.0 HB2 D:CYS886 4.1 63.8 1.0 HH22 D:ARG957 4.1 62.4 1.0 N D:CYS886 4.1 63.8 1.0 N D:CYS969 4.3 57.3 1.0 HB2 D:CYS969 4.3 57.3 1.0 CG2 D:THR888 4.4 67.6 1.0 N D:CYS972 4.4 57.0 1.0 CA D:CYS886 4.4 63.8 1.0 HB3 D:CYS962 4.4 62.7 1.0 N D:GLU963 4.4 67.5 1.0 CA D:CYS969 4.4 57.3 1.0 CA D:CYS972 4.5 57.0 1.0 CB D:SER964 4.6 64.3 1.0 C D:CYS962 4.6 62.7 1.0 O D:CYS969 4.6 57.3 1.0 N D:SER964 4.6 64.3 1.0 HE D:ARG957 4.7 62.4 1.0 HB D:THR888 4.8 67.6 1.0 H D:THR888 4.8 67.6 1.0 C D:CYS969 4.8 57.3 1.0 HB3 D:SER964 4.8 64.3 1.0 HA D:ASP885 4.9 61.9 1.0 HA D:CYS972 4.9 57.0 1.0 HA D:THR968 5.0 55.5 1.0

Zinc binding site 2 out of 3 in the Streptomyces Venezuelae Rnap Unconstrained Open Promoter Complex with Whia and Whib Transcription Factors


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Streptomyces Venezuelae Rnap Unconstrained Open Promoter Complex with Whia and Whib Transcription Factors within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn2001 b:100.2 occ:1.00 SG D:CYS62 2.3 89.2 1.0 SG D:CYS75 2.3 98.0 1.0 SG D:CYS78 2.3 91.5 1.0 SG D:CYS60 2.3 87.5 1.0 H D:CYS62 2.9 89.2 1.0 HB2 D:CYS60 2.9 87.5 1.0 HB3 D:CYS75 3.0 98.0 1.0 CB D:CYS75 3.2 98.0 1.0 CB D:CYS60 3.2 87.5 1.0 HB3 D:ARG77 3.4 98.2 1.0 H D:CYS78 3.4 91.5 1.0 HB2 D:CYS75 3.4 98.0 1.0 H D:GLY63 3.4 92.2 1.0 H D:LYS64 3.5 99.6 1.0 N D:CYS62 3.6 89.2 1.0 CB D:CYS62 3.7 89.2 1.0 CB D:CYS78 3.7 91.5 1.0 HB3 D:CYS78 3.8 91.5 1.0 HB3 D:CYS60 3.8 87.5 1.0 HB3 D:LYS64 3.8 99.6 1.0 H D:TYR61 3.8 84.0 1.0 HB3 D:CYS62 3.9 89.2 1.0 HD1 D:TYR65 3.9 99.4 1.0 N D:CYS78 4.0 91.5 1.0 N D:GLY63 4.1 92.2 1.0 CA D:CYS62 4.1 89.2 1.0 N D:TYR61 4.2 84.0 1.0 N D:LYS64 4.3 99.6 1.0 CB D:ARG77 4.3 98.2 1.0 H D:TYR65 4.4 99.4 1.0 CA D:CYS60 4.5 87.5 1.0 HB2 D:CYS78 4.5 91.5 1.0 HB2 D:CYS62 4.5 89.2 1.0 C D:CYS60 4.5 87.5 1.0 HB2 D:LYS64 4.5 99.6 1.0 CA D:CYS78 4.5 91.5 1.0 CB D:LYS64 4.5 99.6 1.0 H D:ARG77 4.5 98.2 1.0 HB D:VAL80 4.6 82.9 1.0 C D:CYS62 4.6 89.2 1.0 HB3 D:TYR61 4.6 84.0 1.0 CA D:CYS75 4.6 98.0 1.0 HE1 D:TYR65 4.6 99.4 1.0 HB2 D:ARG77 4.7 98.2 1.0 C D:TYR61 4.7 84.0 1.0 CD1 D:TYR65 4.8 99.4 1.0 HG2 D:ARG77 4.8 98.2 1.0 O D:CYS75 4.9 98.0 1.0 H D:VAL80 4.9 82.9 1.0 H D:GLY79 4.9 91.2 1.0 CA D:TYR61 4.9 84.0 1.0 C D:CYS75 4.9 98.0 1.0 C D:ARG77 4.9 98.2 1.0

Zinc binding site 3 out of 3 in the Streptomyces Venezuelae Rnap Unconstrained Open Promoter Complex with Whia and Whib Transcription Factors


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Streptomyces Venezuelae Rnap Unconstrained Open Promoter Complex with Whia and Whib Transcription Factors within 5.0Å range: probe atom residue distance (Å) B Occ I:Zn2000 b:88.9 occ:1.00 SG I:CYS122 2.3 47.4 1.0 SG I:CYS18 2.3 53.8 1.0 SG I:CYS19 2.3 49.1 1.0 HD2 I:ARG16 2.6 59.5 1.0 H I:CYS19 3.2 49.1 1.0 HB2 I:CYS122 3.4 47.4 1.0 HH11 I:ARG16 3.4 59.5 1.0 CD I:ARG16 3.5 59.5 1.0 N I:CYS19 3.5 49.1 1.0 CB I:CYS122 3.5 47.4 1.0 HB3 I:ARG16 3.6 59.5 1.0 CB I:CYS19 3.6 49.1 1.0 HA I:ASP123 3.6 44.2 1.0 HD3 I:ARG16 3.7 59.5 1.0 HA I:CYS19 3.7 49.1 1.0 N I:ASP123 3.7 44.2 1.0 H I:ASP123 3.8 44.2 1.0 CA I:CYS19 3.8 49.1 1.0 C I:CYS122 3.8 47.4 1.0 HB2 I:ASP123 3.9 44.2 1.0 CB I:CYS18 4.0 53.8 1.0 HB2 I:CYS19 4.0 49.1 1.0 CA I:ASP123 4.1 44.2 1.0 NH1 I:ARG16 4.1 59.5 1.0 HG2 I:ARG16 4.2 59.5 1.0 C I:CYS18 4.2 53.8 1.0 HB2 I:CYS18 4.2 53.8 1.0 O I:CYS122 4.2 47.4 1.0 CG I:ARG16 4.2 59.5 1.0 HB3 I:CYS122 4.2 47.4 1.0 CA I:CYS122 4.3 47.4 1.0 CB I:ARG16 4.3 59.5 1.0 HB3 I:CYS19 4.4 49.1 1.0 HB3 I:ALA120 4.4 46.2 1.0 NE I:ARG16 4.5 59.5 1.0 CB I:ASP123 4.5 44.2 1.0 HB3 I:CYS18 4.6 53.8 1.0 CA I:CYS18 4.6 53.8 1.0 HB2 I:ARG16 4.6 59.5 1.0 HH12 I:ARG16 4.7 59.5 1.0 CZ I:ARG16 4.7 59.5 1.0 H I:CYS18 4.8 53.8 1.0 O I:CYS18 5.0 53.8 1.0

M.Lilic, E.A.Campbell. Streptomyces Venezuelae Rnap Unconstrained Open Promoter Complex with Whia and Whib Transcription Factors To Be Published.