Zinc in PDB, part 128 (files: 5081-5120),
PDB 3dgn-3dsw
Experimental structures of coordination spheres of Zinc (Zn) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Zinc atoms. PDB files: 5081-5120 (PDB 3dgn-3dsw).
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3dgn (Zn: 1) - A Non-Biological Atp Binding Protein Crystallized in the Presence of 100 Mm Adp
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3dgo (Zn: 1) - A Non-Biological Atp Binding Protein with A Tyr-Phe Mutation in the Ligand Binding Domain
Other atoms:
Cl (1);
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3dgv (Zn: 3) - Crystal Structure of Thrombin Activatable Fibrinolysis Inhibitor (Tafi)
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3dh1 (Zn: 4) - Crystal Structure of Human Trna-Specific Adenosine-34 Deaminase Subunit ADAT2
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3dha (Zn: 2) - An Ultral High Resolution Structure of N-Acyl Homoserine Lactone Hydrolase with the Product N-Hexanoyl-L-Homoserine Bound at An Alternative Site
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3dhb (Zn: 2) - 1.4 Angstrom Structure of N-Acyl Homoserine Lactone Hydrolase with the Product N-Hexanoyl-L-Homoserine Bound at the Catalytic Metal Center
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3dhc (Zn: 2) - 1.3 Angstrom Structure of N-Acyl Homoserine Lactone Hydrolase with the Product N-Hexanoyl-L-Homocysteine Bound to the Catalytic Metal Center
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3di4 (Zn: 2) - Crystal Structure of Protein of Unknown Function (DUF1989) (YP_165628.1) From Silicibacter Pomeroyi Dss-3 at 1.60 A Resolution
Other atoms:
Cl (4);
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3did (Zn: 12) - Crystal Structure of the F87M/L110M Mutant of Human Transthyretin at pH 4.6 Soaked
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3dkv (Zn: 1) - Crystal Structure of Adenylate Kinase Variant AKLSE1
Other atoms:
Mg (1);
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3dl0 (Zn: 2) - Crystal Structure of Adenylate Kinase Variant AKLSE3
Other atoms:
Mg (2);
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3dlj (Zn: 4) - Crystal Structure of Human Carnosine Dipeptidase 1
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3dll (Zn: 2) - The Oxazolidinone Antibiotics Perturb the Ribosomal Peptidyl-Transferase Center and Effect Trna Positioning
Other atoms:
F (1);
Mg (35);
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3dln (Zn: 1) - Crystal Structure of the Binding Domain of the Ampa Subunit GLUR3 Bound to Glutamate
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3dmo (Zn: 4) - 1.6 A Crystal Structure of Cytidine Deaminase From Burkholderia Pseudomallei
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3dng (Zn: 4) - Crystal Structure of the Complex Between Mmp-8 and A Non- Zinc Chelating Inhibitor
Other atoms:
Ca (4);
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3dnz (Zn: 1) - Thermolysin By Lb Nanotemplate Method Before High X-Ray Dose on Esrf ID14-2 Beamline
Other atoms:
Ca (4);
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3do0 (Zn: 1) - Thermolysin By Classical Hanging Drop Method After High X- Ray Dose on Esrf ID14-2 Beamline
Other atoms:
Ca (4);
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3do1 (Zn: 1) - Thermolysin By Classical Hanging Drop Method Before High X- Ray Dose on Esrf ID14-2 Beamline
Other atoms:
Ca (4);
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3do2 (Zn: 1) - Thermolysin By Lb Nanotemplate Method After High X-Ray Dose on Esrf ID14-2 Beamline
Other atoms:
Ca (4);
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3dow (Zn: 1) - Complex Structure of Gaba Type A Receptor Associated Protein and Its Binding Epitope on Calreticulin
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3dp4 (Zn: 2) - Crystal Structure of the Binding Domain of the Ampa Subunit GLUR3 Bound to Ampa
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3dp6 (Zn: 6) - Crystal Structure of the Binding Domain of the Ampa Subunit GLUR2 Bound to Glutamate
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3dpe (Zn: 2) - Crystal Structure of the Complex Between Mmp-8 and A Non- Zinc Chelating Inhibitor
Other atoms:
Ca (2);
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3dpf (Zn: 4) - Crystal Structure of the Complex Between Mmp-8 and A Non- Zinc Chelating Inhibitor
Other atoms:
Ca (4);
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3dpl (Zn: 3) - Structural Insights Into NEDD8 Activation of Cullin-Ring Ligases: Conformational Control of Conjugation.
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3dpy (Zn: 1) - Protein Farnesyltransferase Complexed with Fpp and Caged Tkcvim Substrate
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3dqr (Zn: 1) - Structure of Neuronal Nos D597N/M336V Mutant Heme Domain in Complex with A Inhibitor (+-)-N1-{Cis-4'-[(6"-Aminopyridin- 2"-Yl)Methyl]Pyrrolidin-3'-Yl}Ethane-1,2-Diamine
Other atoms:
Fe (2);
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3dqs (Zn: 1) - Structure of Endothelial Nos Heme Domain in Complex with A Inhibitor (+-)-N1-{Cis-4'-[(6"-Amino-4"-Methylpyridin-2"- Yl)Methyl]Pyrrolidin-3'-Yl}-N2-(4'-Chlorobenzyl)Ethane-1,2- Diamine
Other atoms:
As (2);
Fe (2);
Cl (2);
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3dqt (Zn: 1) - Structure of Endothelial Nos Heme Domain in Complex with A Inhibitor (+-)-N1-{Trans-4'-[(6"-Amino-4"-Methylpyridin-2"- Yl)Methyl]Pyrrolidin-3'-Yl}-N2-(3'-Chlorobenzyl)Ethane-1,2- Diamine
Other atoms:
As (2);
Fe (2);
Cl (2);
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3dqv (Zn: 6) - Structural Insights Into NEDD8 Activation of Cullin-Ring Ligases: Conformational Control of Conjugation
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3dra (Zn: 1) - Candida Albicans Protein Geranylgeranyltransferase-I Complexed with Ggpp
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3ds9 (Zn: 1) - A Potent Peptidomimetic Inhibitor of Botulinum Neurotoxin Serotype A Has A Very Different Conformation Than Snap-25 Substrate
Other atoms:
Ni (1);
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3dse (Zn: 1) - A Potent Peptidomimetic Inhibitor of Botulinum Neurotoxin Serotype A Has A Very Different Conformation Than Snap-25 Substrate
Other atoms:
Ni (1);
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3dsl (Zn: 2) - The Three-Dimensional Structure of Bothropasin, the Main Hemorrhagic Factor From Bothrops Jararaca Venom.
Other atoms:
Ca (6);
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3dss (Zn: 1) - Crystal Structure of Rabggtase(Delta Lrr; Delta Ig)
Other atoms:
Ca (2);
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3dst (Zn: 1) - Crystal Structure of Rabggtase(Delta Lrr; Delta Ig)in Complex with Geranylgeranyl Pyrophosphate
Other atoms:
Ca (1);
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3dsu (Zn: 1) - Crystal Structure of Rabggtase(Delta Lrr; Delta Ig)in Complex with Farnesyl Pyrophosphate
Other atoms:
Ca (1);
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3dsv (Zn: 1) - Crystal Structure of Rabggtase(Delta Lrr; Delta Ig)in Complex with Mono-Prenylated Peptide Ser-Cys-Ser-Cys(Gg) Derivated From RAB7
Other atoms:
Ca (1);
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3dsw (Zn: 1) - Crystal Structure of Rabggtase(Delta Lrr; Delta Ig)in Complex with Mono-Prenylated Peptide Ser-Cys(Gg)-Ser-Cys Derivated From RAB7
Other atoms:
Ca (1);
Page generated: Sat Feb 15 18:12:57 2025
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