Zinc in PDB 3di4: Crystal Structure of A DUF1989 Family Protein (SPO0365) From Silicibacter Pomeroyi Dss-3 at 1.60 A Resolution

The structure of Crystal Structure of A DUF1989 Family Protein (SPO0365) From Silicibacter Pomeroyi Dss-3 at 1.60 A Resolution, PDB code: 3di4 was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.41 / 1.60
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	51.465, 95.764, 58.689, 90.00, 109.04, 90.00
R / Rfree (%)	14.1 / 17.5

The structure of Crystal Structure of A DUF1989 Family Protein (SPO0365) From Silicibacter Pomeroyi Dss-3 at 1.60 A Resolution also contains other interesting chemical elements:

Chlorine

(Cl)

4 atoms

The binding sites of Zinc atom in the Crystal Structure of A DUF1989 Family Protein (SPO0365) From Silicibacter Pomeroyi Dss-3 at 1.60 A Resolution (pdb code 3di4). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of A DUF1989 Family Protein (SPO0365) From Silicibacter Pomeroyi Dss-3 at 1.60 A Resolution, PDB code: 3di4:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of A DUF1989 Family Protein (SPO0365) From Silicibacter Pomeroyi Dss-3 at 1.60 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A DUF1989 Family Protein (SPO0365) From Silicibacter Pomeroyi Dss-3 at 1.60 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn286 b:12.6 occ:1.00 O A:HOH294 2.1 13.1 1.0 SG A:CYS150 2.3 13.0 1.0 SG A:CYS167 2.4 12.9 1.0 SG A:CYS237 2.4 13.8 1.0 CB A:CYS237 3.2 13.4 1.0 CB A:CYS167 3.3 12.2 1.0 CB A:CYS150 3.4 13.2 1.0 OD2 A:ASP80 3.7 12.9 1.0 O A:HOH329 3.8 18.4 1.0 CA A:CYS237 3.8 10.4 1.0 CD A:PRO238 3.8 14.6 1.0 N A:CYS167 3.9 11.5 1.0 N A:CYS150 3.9 11.6 1.0 O A:HOH342 4.1 20.6 1.0 OD1 A:ASP80 4.1 13.4 1.0 CG A:ASP80 4.1 13.2 1.0 CA A:CYS167 4.2 11.1 1.0 CA A:CYS150 4.2 13.6 1.0 N A:PRO238 4.4 12.1 1.0 C A:CYS237 4.5 12.6 1.0 CG A:PRO238 4.6 13.0 1.0 O A:HOH528 4.7 39.3 1.0 O A:CYS150 4.8 13.7 1.0 C A:CYS150 4.9 13.1 1.0 N A:CYS237 5.0 12.2 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of A DUF1989 Family Protein (SPO0365) From Silicibacter Pomeroyi Dss-3 at 1.60 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of A DUF1989 Family Protein (SPO0365) From Silicibacter Pomeroyi Dss-3 at 1.60 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn286 b:12.6 occ:1.00 O B:HOH295 2.1 11.7 1.0 SG B:CYS150 2.3 12.7 1.0 SG B:CYS167 2.3 13.0 1.0 SG B:CYS237 2.3 13.1 1.0 CB B:CYS237 3.2 12.9 1.0 CB B:CYS167 3.2 12.4 1.0 CB B:CYS150 3.5 11.8 1.0 OD2 B:ASP80 3.7 12.5 1.0 O B:HOH330 3.7 18.6 1.0 CA B:CYS237 3.8 12.1 1.0 CD B:PRO238 3.8 12.9 1.0 N B:CYS150 3.9 12.3 1.0 N B:CYS167 3.9 11.6 1.0 OD1 B:ASP80 4.1 12.9 1.0 CG B:ASP80 4.1 11.4 1.0 O B:HOH375 4.2 24.5 1.0 CA B:CYS167 4.2 10.1 1.0 CA B:CYS150 4.2 12.9 1.0 N B:PRO238 4.5 11.5 1.0 C B:CYS237 4.6 11.3 1.0 O B:HOH601 4.6 43.9 1.0 CG B:PRO238 4.7 12.0 1.0 O B:CYS150 4.8 13.2 1.0 O B:HOH579 4.8 42.8 1.0 C B:CYS150 4.9 11.1 1.0 N B:CYS237 5.0 11.4 1.0 C B:ARG149 5.0 11.2 1.0

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.