Zinc in PDB 9c0f: Piggybat Transposase Protein-Dna Complex

The binding sites of Zinc atom in the Piggybat Transposase Protein-Dna Complex (pdb code 9c0f). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Piggybat Transposase Protein-Dna Complex, PDB code: 9c0f:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the Piggybat Transposase Protein-Dna Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Piggybat Transposase Protein-Dna Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn601 b:89.0 occ:1.00 NE2 C:HIS567 1.9 71.8 1.0 ND1 C:HIS516 1.9 69.1 1.0 SG C:CYS550 2.2 65.7 1.0 SG C:CYS553 2.4 69.9 1.0 CE1 C:HIS516 2.8 69.1 1.0 CD2 C:HIS567 2.8 71.8 1.0 CE1 C:HIS567 3.0 71.8 1.0 CG C:HIS516 3.0 69.1 1.0 CB C:CYS550 3.5 65.7 1.0 CB C:HIS516 3.6 69.1 1.0 CB C:CYS553 3.9 69.9 1.0 NE2 C:HIS516 3.9 69.1 1.0 CG C:HIS567 4.0 71.8 1.0 CD2 C:HIS516 4.1 69.1 1.0 ND1 C:HIS567 4.1 71.8 1.0 CA C:HIS516 4.3 69.1 1.0 N C:CYS553 4.5 69.9 1.0 CA C:CYS550 4.8 65.7 1.0 CB C:PHE552 4.8 68.5 1.0 CA C:CYS553 4.9 69.9 1.0

Zinc binding site 2 out of 4 in the Piggybat Transposase Protein-Dna Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Piggybat Transposase Protein-Dna Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn602 b:89.6 occ:1.00 ND1 C:HIS558 1.8 67.2 1.0 SG C:CYS562 2.2 70.3 1.0 SG C:CYS537 2.5 71.3 1.0 SG C:CYS534 2.7 67.0 1.0 CE1 C:HIS558 2.8 67.2 1.0 CG C:HIS558 3.0 67.2 1.0 CB C:HIS558 3.6 67.2 1.0 CB C:CYS534 3.6 67.0 1.0 CB C:CYS562 3.7 70.3 1.0 NE2 C:HIS558 3.9 67.2 1.0 CD2 C:HIS558 4.1 67.2 1.0 CB C:CYS537 4.1 71.3 1.0 N C:HIS558 4.4 67.2 1.0 OG C:SER544 4.5 69.8 1.0 CA C:HIS558 4.6 67.2 1.0 N C:CYS537 4.7 71.3 1.0 CA C:CYS562 4.9 70.3 1.0

Zinc binding site 3 out of 4 in the Piggybat Transposase Protein-Dna Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Piggybat Transposase Protein-Dna Complex within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn601 b:124.3 occ:1.00 ND1 D:HIS516 1.9 112.4 1.0 NE2 D:HIS567 1.9 111.2 1.0 CE1 D:HIS516 2.6 112.4 1.0 SG D:CYS550 2.6 104.2 1.0 SG D:CYS553 2.8 108.9 1.0 CD2 D:HIS567 2.8 111.2 1.0 CE1 D:HIS567 3.0 111.2 1.0 CG D:HIS516 3.0 112.4 1.0 NE2 D:HIS516 3.7 112.4 1.0 CB D:HIS516 3.8 112.4 1.0 CB D:CYS550 3.8 104.2 1.0 CB D:PHE552 3.9 109.8 1.0 CD2 D:HIS516 3.9 112.4 1.0 CG D:HIS567 4.0 111.2 1.0 ND1 D:HIS567 4.1 111.2 1.0 CB D:CYS553 4.1 108.9 1.0 N D:CYS553 4.2 108.9 1.0 CA D:HIS516 4.4 112.4 1.0 O D:CYS553 4.7 108.9 1.0 CG D:PHE552 4.7 109.8 1.0 CD2 D:PHE552 4.7 109.8 1.0 CA D:PHE552 4.8 109.8 1.0 CA D:CYS553 4.8 108.9 1.0 N D:PHE552 4.8 109.8 1.0 C D:PHE552 4.9 109.8 1.0

Zinc binding site 4 out of 4 in the Piggybat Transposase Protein-Dna Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Piggybat Transposase Protein-Dna Complex within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn602 b:140.7 occ:1.00 ND1 D:HIS558 2.2 107.3 1.0 SG D:CYS537 2.6 114.3 1.0 SG D:CYS562 2.7 105.2 1.0 CE1 D:HIS558 2.8 107.3 1.0 CG D:HIS558 3.1 107.3 1.0 SG D:CYS534 3.4 111.4 1.0 CB D:HIS558 3.6 107.3 1.0 NE2 D:HIS558 3.7 107.3 1.0 CD2 D:HIS558 3.8 107.3 1.0 CB D:CYS562 3.9 105.2 1.0 CB D:CYS534 4.0 111.4 1.0 CB D:CYS537 4.2 114.3 1.0 N D:HIS558 4.5 107.3 1.0 N D:CYS537 4.6 114.3 1.0 CA D:HIS558 4.6 107.3 1.0 CA D:CYS537 4.9 114.3 1.0 CB D:VAL536 5.0 112.8 1.0

A.B.Hickman, L.Lannes, C.M.Furman, C.Hong, L.Franklin, R.Ghirlando, A.Ghosh, W.Luo, P.Konstantinidou, H.A.Lorenzi, A.Grove, A.D.Haase, M.H.Wilson, F.Dyda. Activity of the Mammalian Dna Transposon Piggybat From Myotis Lucifugus Is Restricted By Its Own Transposon Ends. Nat Commun V. 16 458 2025.
ISSN: ESSN 2041-1723
PubMed: 39774116
DOI: 10.1038/S41467-024-55784-9