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Zinc in PDB 3do2: Thermolysin By Lb Nanotemplate Method After High X-Ray Dose on Esrf ID14-2 Beamline

Enzymatic activity of Thermolysin By Lb Nanotemplate Method After High X-Ray Dose on Esrf ID14-2 Beamline

All present enzymatic activity of Thermolysin By Lb Nanotemplate Method After High X-Ray Dose on Esrf ID14-2 Beamline:
3.4.24.27;

Protein crystallography data

The structure of Thermolysin By Lb Nanotemplate Method After High X-Ray Dose on Esrf ID14-2 Beamline, PDB code: 3do2 was solved by E.Pechkova, S.K.Tripathi, C.Nicolini, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 68.04 / 1.22
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 92.562, 92.562, 128.712, 90.00, 90.00, 120.00
R / Rfree (%) 23.8 / 26.1

Zinc Binding Sites:

The binding sites of Zinc atom in the Thermolysin By Lb Nanotemplate Method After High X-Ray Dose on Esrf ID14-2 Beamline (pdb code 3do2). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Thermolysin By Lb Nanotemplate Method After High X-Ray Dose on Esrf ID14-2 Beamline, PDB code: 3do2:

Zinc binding site 1 out of 1 in 3do2

Go back to Zinc Binding Sites List in 3do2
Zinc binding site 1 out of 1 in the Thermolysin By Lb Nanotemplate Method After High X-Ray Dose on Esrf ID14-2 Beamline


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Thermolysin By Lb Nanotemplate Method After High X-Ray Dose on Esrf ID14-2 Beamline within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn405

b:15.4
occ:1.00
NE2 A:HIS142 2.0 14.3 1.0
NE2 A:HIS146 2.1 14.5 1.0
OE2 A:GLU166 2.1 18.9 1.0
CD A:GLU166 2.8 17.0 1.0
OE1 A:GLU166 3.0 18.9 1.0
CE1 A:HIS142 3.0 14.7 1.0
CD2 A:HIS142 3.0 13.7 1.0
CD2 A:HIS146 3.1 14.3 1.0
CE1 A:HIS146 3.1 14.7 1.0
OH A:TYR157 4.0 12.6 0.5
ND1 A:HIS142 4.1 13.4 1.0
CG A:HIS142 4.1 13.4 1.0
ND1 A:HIS146 4.2 13.6 1.0
NE2 A:HIS231 4.2 16.4 1.0
CG A:HIS146 4.2 12.6 1.0
OE1 A:GLU143 4.2 17.2 1.0
CG A:GLU166 4.3 16.5 1.0
CA A:VAL1001 4.3 23.4 1.0
O A:HOH1137 4.3 16.9 1.0
N A:VAL1001 4.5 22.9 1.0
CB A:SER169 4.5 14.9 1.0
O A:HOH1185 4.5 32.7 1.0
OG A:SER169 4.7 14.8 1.0
CD2 A:HIS231 4.7 17.2 1.0
O A:VAL1001 4.7 22.2 1.0
C A:VAL1001 4.7 23.5 1.0
CA A:GLU166 4.9 13.8 1.0
CD A:GLU143 4.9 16.5 1.0
CZ A:TYR157 4.9 12.3 0.5
OE2 A:GLU143 5.0 18.1 1.0
CE1 A:TYR157 5.0 12.0 0.5

Reference:

E.Pechkova, S.K.Tripathi, C.Nicolini. Radiation Damage in Protein Structural Characterization By Synchrotron Radiation: State of the Art and Nanotechnology-Based Perspective To Be Published.
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