Zinc in PDB, part 486 (files: 19401-19440),
PDB 8d7v-8dpr
Experimental structures of coordination spheres of Zinc (Zn) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Zinc atoms. PDB files: 19401-19440 (PDB 8d7v-8dpr).
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8d7v (Zn: 1) - Cereblon~DDB1 Bound to Cc-92480 with DDB1 in the Twisted Conformation
Other atoms:
F (1);
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8d7w (Zn: 1) - Cereblon~DDB1 Bound to Cc-92480 with DDB1 in the Hinged Conformation
Other atoms:
F (1);
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8d7x (Zn: 1) - Cereblon~DDB1 in the Apo Form with DDB1 in the Hinged Conformation
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8d7y (Zn: 1) - Cereblon-DDB1 in the Apo Form with DDB1 in the Twisted Conformation
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8d7z (Zn: 2) - Cereblon-DDB1 Bound to Cc-92480 and Ikaros ZF1-2-3
Other atoms:
F (1);
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8d80 (Zn: 2) - Cereblon~DDB1 Bound to Iberdomide and Ikaros ZF1-2-3
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8d81 (Zn: 1) - Cereblon~DDB1 Bound to Pomalidomide
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8d8n (Zn: 4) - Gramp Non-Match Pfs Target Rna
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8d8o (Zn: 1) - Cryo-Em Structure of Substrate Unbound Papp-A
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8d98 (Zn: 2) - Crystal Structure of Danio Rerio Histone Deacetylase 6 Catalytic Domain 2 Complexed with Fluorinated Inhibitor 5
Other atoms:
F (4);
K (4);
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8d99 (Zn: 2) - Crystal Structure of Danio Rerio Histone Deacetylase 6 Catalytic Domain 2 Complexed with Fluorinated Inhibitor 7
Other atoms:
K (4);
F (3);
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8d9a (Zn: 2) - Crystal Structure of Danio Rerio Histone Deacetylase 6 Catalytic Domain 2 Complexed with Fluorinated Inhibitor 8
Other atoms:
K (4);
F (6);
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8d9b (Zn: 2) - Crystal Structure of Danio Rerio Histone Deacetylase 6 Catalytic Domain 2 Complexed with Fluorinated Inhibitor 9
Other atoms:
K (4);
F (8);
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8d9c (Zn: 2) - Crystal Structure of Danio Rerio Histone Deacetylase 6 Catalytic Domain 2 Complexed with Fluorinated Inhibitor 10
Other atoms:
F (10);
K (4);
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8d9d (Zn: 3) - Human Dna Polymerase-Alpha/Primase Elongation Complex II Bound to Primer/Template
Other atoms:
Mg (2);
Fe (4);
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8dar (Zn: 2) - Saccharomyces Cerevisiae UFD1/NPL4/CDC48 Complex Unbound But in the Presence of Sumo-Ubiquitin(K48POLYUB)-Meos and Atp
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8das (Zn: 2) - Saccharomyces Cerevisiae UFD1/NPL4/CDC48 Complex Bound to Two Ubiquitin Moieties in Presence of Sumo-Ubiquitin(K48POLYUB)-Meos and Atp, State 1 (Inta)
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8dat (Zn: 2) - Saccharomyces Cerevisiae UFD1/NPL4/CDC48 Complex Bound to Three Ubiquitin Moieties in Presence of Sumo-Ubiquitin(K48POLYUB)-Meos and Atp, State 1 (Intb)
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8dau (Zn: 2) - Saccharomyces Cerevisiae UFD1/NPL4/CDC48 Complex Bound to Two Folded Ubiquitin Moieties and One Unfolded Ubiquitin in Presence of Sumo- Ubiquitin(K48POLYUB)-Meos and Atp, State 1 (Ua)
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8dav (Zn: 2) - Saccharomyces Cerevisiae UFD1/NPL4/CDC48 Complex Bound to Two Ubiquitin Moieties and One Unfolded Ubiquitin in Presence of Sumo- Ubiquitin(K48POLYUB)-Meos and Atp, State 2 (Uc)
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8daw (Zn: 2) - Saccharomyces Cerevisiae UFD1/NPL4/CDC48 Complex Bound to Three Ubiquitin Moieties and One Unfolded Ubiquitin in Presence of Sumo- Ubiquitin(K48POLYUB)-Meos and Atp, State 2 (Ud)
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8db4 (Zn: 9) - Crystal Structure of the Peanut Allergen Ara H 2 Bound By Two Neutralizing Antibodies 22S1 and 13T1
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8dc4 (Zn: 4) - Crystal Structure of P53 Y220C Covalently Bound to Carbazole KG3
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8dc6 (Zn: 4) - Crystal Structure of P53 Y220C Covalently Bound to Indole KG6
Other atoms:
Mg (2);
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8dc7 (Zn: 1) - Crystal Structure of P53 Y220C Covalently Bound to Indole KG10
Other atoms:
Mg (2);
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8dc8 (Zn: 1) - Crystal Structure of P53 Y220C Covalently Bound to Azaindole KG13
Other atoms:
Mg (1);
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8dcd (Zn: 4) - Rna Ligase Rtcb From Pyrococcus Horikoshii in Complex with ZN2+ and Gtp
Other atoms:
Cl (2);
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8dek (Zn: 2) - The Structure of the Glycopeptidase Catalytic Domain Including the Linker of AMUC_1438
Other atoms:
Na (1);
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8del (Zn: 1) - Trimeric Heme-Free Cytochrome Variant Apocyt-TRICYT3
Other atoms:
Mg (2);
-
8dey (Zn: 6) - Ternary Complex Structure of Cereblon-DDB1 Bound to IKZF2(ZF2,3) and the Molecular Glue DKY709
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8df2 (Zn: 4) - The Structure of the 'Alt' Construct of the AMUC_1438 Glycopeptidase
Other atoms:
Na (12);
Ca (4);
-
8df5 (Zn: 2) - Sars-Cov-2 Beta Rbd in Complex with Human ACE2 and S304 Fab and S309 Fab
Other atoms:
Cl (22);
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8dgd (Zn: 2) - Crystal Structure of Gaf Domain-Containing Protein, From Klebsiella Pneumoniae
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8dh6 (Zn: 1) - Cryo-Em Structure of Saccharomyces Cerevisiae Cytochrome C Oxidase (Complex IV) Extracted in Lipid Nanodiscs
Other atoms:
Fe (2);
Cu (2);
Ca (1);
Mg (1);
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8di4 (Zn: 2) - Discovery of Mk-8189, A Highly Potent and Selective PDE10A Inhibitor For the Treatment of Schizophrenia
Other atoms:
Mg (2);
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8dj9 (Zn: 1) - Carbonic Anhydrase II in Complex with Ibuprofen
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8djh (Zn: 4) - Ternary Complex of SUMO1 with A Phosphomimetic Sim of Pml and Zinc
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8dji (Zn: 3) - Ternary Complex of SUMO1 with the Sim of Pml and Zinc
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8dpc (Zn: 4) - Crystal Structure of Carbonic Anhydrase From Neisseria Gonorrhoeae
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8dpr (Zn: 1) - Crystal Structure of Sars-Cov-2 Main Protease in Complex with Inhibitor Tkb-248
Other atoms:
F (4);
Page generated: Wed Apr 26 00:37:15 2023
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