Zinc in PDB 7xga: uc(Nmr) Strucutre of Chimeric Protein For Model of Phd-Stella Complex

All present enzymatic activity of uc(Nmr) Strucutre of Chimeric Protein For Model of Phd-Stella Complex:
2.3.2.27;

The binding sites of Zinc atom in the uc(Nmr) Strucutre of Chimeric Protein For Model of Phd-Stella Complex (pdb code 7xga). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the uc(Nmr) Strucutre of Chimeric Protein For Model of Phd-Stella Complex, PDB code: 7xga:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in the uc(Nmr) Strucutre of Chimeric Protein For Model of Phd-Stella Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of uc(Nmr) Strucutre of Chimeric Protein For Model of Phd-Stella Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:0.0 occ:1.00 SG A:CYS12 2.4 0.0 1.0 SG A:CYS20 2.5 0.0 1.0 SG A:CYS9 2.5 0.0 1.0 SG A:CYS23 2.5 0.0 1.0 HB2 A:CYS20 3.0 0.0 1.0 HB2 A:CYS12 3.2 0.0 1.0 HB2 A:CYS23 3.2 0.0 1.0 CB A:CYS20 3.3 0.0 1.0 HB2 A:CYS9 3.4 0.0 1.0 CB A:CYS12 3.4 0.0 1.0 CB A:CYS9 3.4 0.0 1.0 CB A:CYS23 3.5 0.0 1.0 HB3 A:CYS20 3.6 0.0 1.0 HB3 A:CYS9 3.6 0.0 1.0 H A:CYS23 3.8 0.0 1.0 H A:CYS12 4.0 0.0 1.0 H A:LYS13 4.1 0.0 1.0 H A:ASP14 4.1 0.0 1.0 HB3 A:CYS23 4.2 0.0 1.0 HB3 A:CYS12 4.3 0.0 1.0 N A:CYS23 4.3 0.0 1.0 CA A:CYS12 4.3 0.0 1.0 N A:CYS12 4.4 0.0 1.0 CA A:CYS23 4.5 0.0 1.0 N A:LYS13 4.6 0.0 1.0 H A:ASP15 4.6 0.0 1.0 C A:CYS12 4.7 0.0 1.0 HB3 A:ASP14 4.7 0.0 1.0 CA A:CYS20 4.7 0.0 1.0 H A:CYS9 4.7 0.0 1.0 HB2 A:LYS22 4.8 0.0 1.0 H A:LYS22 4.8 0.0 1.0 CA A:CYS9 4.9 0.0 1.0 HA A:CYS23 4.9 0.0 1.0 N A:CYS20 5.0 0.0 1.0 O A:ASP15 5.0 0.0 1.0 H A:CYS20 5.0 0.0 1.0

Zinc binding site 2 out of 3 in the uc(Nmr) Strucutre of Chimeric Protein For Model of Phd-Stella Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of uc(Nmr) Strucutre of Chimeric Protein For Model of Phd-Stella Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn202 b:0.0 occ:1.00 SG A:CYS40 2.4 0.0 1.0 SG A:CYS67 2.4 0.0 1.0 SG A:CYS43 2.5 0.0 1.0 SG A:CYS70 2.5 0.0 1.0 H A:CYS67 3.0 0.0 1.0 HB2 A:CYS43 3.1 0.0 1.0 HB2 A:CYS40 3.3 0.0 1.0 CB A:CYS40 3.4 0.0 1.0 HB2 A:CYS70 3.4 0.0 1.0 CB A:CYS43 3.4 0.0 1.0 H A:CYS43 3.4 0.0 1.0 CB A:CYS70 3.5 0.0 1.0 HB3 A:GLU42 3.5 0.0 1.0 HB3 A:CYS40 3.6 0.0 1.0 CB A:CYS67 3.6 0.0 1.0 HB2 A:CYS67 3.7 0.0 1.0 N A:CYS67 3.7 0.0 1.0 HB3 A:TYR66 3.8 0.0 1.0 HB3 A:CYS70 3.8 0.0 1.0 N A:CYS43 4.1 0.0 1.0 H A:GLU42 4.2 0.0 1.0 HB3 A:CYS43 4.2 0.0 1.0 CA A:CYS67 4.2 0.0 1.0 H A:CYS70 4.4 0.0 1.0 CA A:CYS43 4.4 0.0 1.0 HB3 A:CYS67 4.5 0.0 1.0 HA A:TYR66 4.5 0.0 1.0 HD2 A:TYR66 4.5 0.0 1.0 CB A:GLU42 4.6 0.0 1.0 C A:TYR66 4.7 0.0 1.0 CB A:TYR66 4.8 0.0 1.0 CA A:CYS40 4.8 0.0 1.0 CA A:CYS70 4.9 0.0 1.0 C A:GLU42 4.9 0.0 1.0 CA A:TYR66 4.9 0.0 1.0 HE2 A:PHE47 4.9 0.0 1.0 HG2 A:GLU42 5.0 0.0 1.0

Zinc binding site 3 out of 3 in the uc(Nmr) Strucutre of Chimeric Protein For Model of Phd-Stella Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of uc(Nmr) Strucutre of Chimeric Protein For Model of Phd-Stella Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn203 b:0.0 occ:1.00 ND1 A:HIS48 2.1 0.0 1.0 SG A:CYS28 2.3 0.0 1.0 SG A:CYS25 2.4 0.0 1.0 SG A:CYS51 2.4 0.0 1.0 HB2 A:HIS48 2.7 0.0 1.0 HB3 A:CYS28 3.0 0.0 1.0 HG11 A:VAL27 3.1 0.0 1.0 CE1 A:HIS48 3.1 0.0 1.0 CG A:HIS48 3.1 0.0 1.0 HB3 A:CYS25 3.1 0.0 1.0 CB A:CYS25 3.2 0.0 1.0 HB2 A:CYS25 3.2 0.0 1.0 HB2 A:CYS51 3.2 0.0 1.0 CB A:CYS28 3.3 0.0 1.0 HE1 A:HIS48 3.3 0.0 1.0 CB A:CYS51 3.4 0.0 1.0 CB A:HIS48 3.4 0.0 1.0 H A:CYS28 3.5 0.0 1.0 HB3 A:CYS51 3.6 0.0 1.0 H A:HIS48 3.8 0.0 1.0 HB3 A:HIS48 3.9 0.0 1.0 N A:CYS28 4.0 0.0 1.0 CG1 A:VAL27 4.0 0.0 1.0 HB2 A:CYS28 4.1 0.0 1.0 HG13 A:VAL27 4.1 0.0 1.0 CA A:CYS28 4.2 0.0 1.0 NE2 A:HIS48 4.2 0.0 1.0 CD2 A:HIS48 4.3 0.0 1.0 HG12 A:VAL27 4.3 0.0 1.0 N A:HIS48 4.5 0.0 1.0 CA A:HIS48 4.6 0.0 1.0 HE21 A:GLN37 4.6 0.0 1.0 H A:GLY30 4.6 0.0 1.0 CA A:CYS25 4.7 0.0 1.0 H A:GLY29 4.7 0.0 1.0 H A:VAL27 4.7 0.0 1.0 CA A:CYS51 4.8 0.0 1.0 O A:GLY30 4.8 0.0 1.0 C A:VAL27 4.9 0.0 1.0 HA A:CYS25 4.9 0.0 1.0 HE1 A:TYR50 4.9 0.0 1.0

K.Hata, N.Kobayashi, K.Sugimura, W.Qin, D.Haxholli, Y.Chiba, S.Yoshimi, G.Hayashi, H.Onoda, T.Ikegami, C.B.Mulholland, A.Nishiyama, M.Nakanishi, H.Leonhardt, T.Konuma, K.Arita. Structural Basis For the Unique Multifaceted Interaction of DPPA3 with the UHRF1 Phd Finger. Nucleic Acids Res. V. 50 12527 2022.
ISSN: ESSN 1362-4962
PubMed: 36420895
DOI: 10.1093/NAR/GKAC1082