Zinc in PDB 7xo4: Sars-Cov-2 Omicron Ba.1 Variant Spike Trimer with Two Mouse ACE2 Bound

Enzymatic activity of Sars-Cov-2 Omicron Ba.1 Variant Spike Trimer with Two Mouse ACE2 Bound

All present enzymatic activity of Sars-Cov-2 Omicron Ba.1 Variant Spike Trimer with Two Mouse ACE2 Bound:
3.4.17.23;

Zinc Binding Sites:

The binding sites of Zinc atom in the Sars-Cov-2 Omicron Ba.1 Variant Spike Trimer with Two Mouse ACE2 Bound (pdb code 7xo4). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Sars-Cov-2 Omicron Ba.1 Variant Spike Trimer with Two Mouse ACE2 Bound, PDB code: 7xo4:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 7xo4

Go back to Zinc Binding Sites List in 7xo4
Zinc binding site 1 out of 2 in the Sars-Cov-2 Omicron Ba.1 Variant Spike Trimer with Two Mouse ACE2 Bound


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Sars-Cov-2 Omicron Ba.1 Variant Spike Trimer with Two Mouse ACE2 Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn901

b:95.2
occ:1.00
NH2 D:ARG518 2.4 0.8 1.0
CG D:GLU402 2.6 0.8 1.0
CZ D:ARG518 3.0 0.8 1.0
CB D:GLU402 3.1 0.8 1.0
NH1 D:ARG518 3.2 0.8 1.0
CD D:GLU402 3.8 0.8 1.0
NE2 D:HIS374 4.0 0.9 1.0
NE D:ARG518 4.1 0.8 1.0
CA D:GLU402 4.3 0.8 1.0
OE2 D:GLU402 4.4 0.8 1.0
CE1 D:HIS374 4.6 0.9 1.0
OE1 D:GLU402 4.7 0.8 1.0
NE2 D:HIS378 4.7 0.9 1.0
CD D:ARG518 4.7 0.8 1.0
O D:GLU402 5.0 0.8 1.0
CE1 D:HIS378 5.0 0.9 1.0

Zinc binding site 2 out of 2 in 7xo4

Go back to Zinc Binding Sites List in 7xo4
Zinc binding site 2 out of 2 in the Sars-Cov-2 Omicron Ba.1 Variant Spike Trimer with Two Mouse ACE2 Bound


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Sars-Cov-2 Omicron Ba.1 Variant Spike Trimer with Two Mouse ACE2 Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn901

b:95.2
occ:1.00
OE1 E:GLU406 2.1 0.8 1.0
O E:ARG518 3.1 0.8 1.0
CB E:ARG518 3.1 0.8 1.0
CD E:GLU406 3.3 0.8 1.0
C E:ARG518 3.4 0.8 1.0
CA E:ALA403 3.6 0.9 1.0
O E:GLU402 3.7 0.8 1.0
CA E:ARG518 3.8 0.8 1.0
CB E:ALA403 3.9 0.9 1.0
CD E:GLN522 4.0 0.9 1.0
CG E:GLN522 4.0 0.9 1.0
CG E:GLU406 4.0 0.8 1.0
CG E:ARG518 4.0 0.8 1.0
CB E:GLN522 4.0 0.9 1.0
N E:THR519 4.1 0.9 1.0
NE2 E:GLN522 4.2 0.9 1.0
OE2 E:GLU406 4.2 0.8 1.0
OE1 E:GLN522 4.3 0.9 1.0
O E:ALA403 4.4 0.9 1.0
CB E:GLU406 4.4 0.8 1.0
C E:GLU402 4.4 0.8 1.0
CD E:ARG518 4.4 0.8 1.0
N E:ALA403 4.4 0.9 1.0
C E:ALA403 4.5 0.9 1.0
CA E:THR519 4.7 0.9 1.0
N E:GLN522 4.9 0.9 1.0

Reference:

Y.Xu, C.Wu, X.Cao, C.Gu, H.Liu, M.Jiang, X.Wang, Q.Yuan, K.Wu, J.Liu, D.Wang, X.He, X.Wang, S.J.Deng, H.E.Xu, W.Yin. Structural and Biochemical Mechanism For Increased Infectivity and Immune Evasion of Omicron Ba.2 Variant Compared to Ba.1 and Their Possible Mouse Origins. Cell Res. V. 32 609 2022.
ISSN: ISSN 1001-0602
PubMed: 35641567
DOI: 10.1038/S41422-022-00672-4
Page generated: Sat Apr 8 05:56:45 2023

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy