Zinc in PDB 7xci: Cryo-Em Structure of Sars-Cov-2 Omicron Rbd in Complex with Human ACE2 Ectodomain (Local Refinement)

The binding sites of Zinc atom in the Cryo-Em Structure of Sars-Cov-2 Omicron Rbd in Complex with Human ACE2 Ectodomain (Local Refinement) (pdb code 7xci). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Cryo-Em Structure of Sars-Cov-2 Omicron Rbd in Complex with Human ACE2 Ectodomain (Local Refinement), PDB code: 7xci:

Zinc binding site 1 out of 1 in the Cryo-Em Structure of Sars-Cov-2 Omicron Rbd in Complex with Human ACE2 Ectodomain (Local Refinement)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Sars-Cov-2 Omicron Rbd in Complex with Human ACE2 Ectodomain (Local Refinement) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn701 b:57.0 occ:1.00 OE2 A:GLU402 2.0 38.9 1.0 NE2 A:HIS374 2.1 38.9 1.0 NE2 A:HIS378 2.1 38.9 1.0 CD2 A:HIS374 2.8 38.9 1.0 CD2 A:HIS378 2.9 38.9 1.0 CD A:GLU402 3.1 38.9 1.0 CE1 A:HIS378 3.1 38.9 1.0 CE1 A:HIS374 3.3 38.9 1.0 OE1 A:GLU402 3.7 38.9 1.0 CG A:HIS374 4.0 38.9 1.0 CG A:HIS378 4.1 38.9 1.0 ND1 A:HIS378 4.1 38.9 1.0 CG A:GLU402 4.2 38.9 1.0 ND1 A:HIS374 4.2 38.9 1.0 OE2 A:GLU375 4.6 38.9 1.0

Z.Zhao, J.Zhou, M.Tian, M.Huang, S.Liu, Y.Xie, P.Han, C.Bai, P.Han, A.Zheng, L.Fu, Y.Gao, Q.Peng, Y.Li, Y.Chai, Z.Zhang, X.Zhao, H.Song, J.Qi, Q.Wang, P.Wang, G.F.Gao. Omicron Sars-Cov-2 Mutations Stabilize Spike Up-Rbd Conformation and Lead to A Non-Rbm-Binding Monoclonal Antibody Escape Nat Commun V. 13 4958 2022.
ISSN: ESSN 2041-1723
DOI: 10.1038/S41467-022-32665-7