Zinc in PDB, part 557 (files: 22241-22280),
PDB 9e87-9esi
Experimental structures of coordination spheres of Zinc (Zn) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Zinc atoms. PDB files: 22241-22280 (PDB 9e87-9esi).
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9e87 (Zn: 2) - De Novo Mycobacterium Tuberculosis Transcription Initiation Pre-Rpo Promoter Complex with Open Beta' Clamp (Rna Polymerase with Sigma-A, Card, and Rbpa)
Other atoms:
Mg (1);
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9e88 (Zn: 2) - De Novo Backtracked Transcription Elongation Complex of Mycobacterium Tuberculosis Rna Polymerase on A Linear Dna Fragment (Tec- Backtracked)
Other atoms:
Mg (1);
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9e8j (Zn: 1) - NUB1/FAT10-Processing Human 26S Proteasome Bound to TXNL1 with RPT1 at Top of Spiral Staircase
Other atoms:
Mg (5);
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9e8l (Zn: 1) - NUB1/FAT10-Processing Human 26S Proteasome Bound to TXNL1 with RPT4 at Top of Spiral Staircase
Other atoms:
Mg (3);
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9e8n (Zn: 1) - NUB1/FAT10-Processing Human 26S Proteasome Bound to TXNL1 with RPT3 at Top of Spiral Staircase
Other atoms:
Mg (2);
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9e8z (Zn: 2) - 4-Component Structure of Retron EC83
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9e90 (Zn: 1) - EC83 Retron Ptua/Ptub (2-1) Complex Bound to Atp
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9ea0 (Zn: 6) - Structure of the Prefusion HKU5-19S Spike Trimer (Conformation 1)
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9ea4 (Zn: 1) - Structure of Citrobacter Bubcd
Other atoms:
Na (1);
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9eat (Zn: 1) - High-Resolution Structure of Escherichia Coli Carbonic Anhydrase 2 in Space Group P4(2)2(1)2
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9eaw (Zn: 2) - Escherichia Coli Carbonic Anhydrase 2 in Space Group P2(1)2(1)2
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9ebz (Zn: 4) - Escherichia Coli Carbonic Anhydrase 2 in Space Group C222(1)
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9ed0 (Zn: 3) - Human LARP1 Bound to the 40S Small Ribosomal Subunit
Other atoms:
K (71);
Mg (92);
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9edl (Zn: 6) - Crystal Structure of Francisella Tularensis DSBA1
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9efm (Zn: 3) - Cryo-Em Structure of COP9 Signalosome Precatalytic State with Neddylated Cullin-1
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9efq (Zn: 3) - Cryo-Em Structure of COP9 Signalosome Precatalytic State with Neddylated Cullin-2
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9efv (Zn: 4) - Cryo-Em Structure of Csn-N8CUL1 in Complex with CSN5I-3
Other atoms:
F (2);
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9eg1 (Zn: 3) - COP9 Signalosome Deneddylation Complex with Cullin-5
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9eg8 (Zn: 3) - Cryo-Em Structure of COP9 Signalosome Precatalytic State with Neddylated Cullin-4A
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9egl (Zn: 3) - Cryo-Em Structure of COP9 Signalosome Precatalytic State with Neddylated Cullin-3
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9egv (Zn: 6) - Hoil-1 RING2 Domain Bound to Ubiquitin
Other atoms:
Cl (1);
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9egw (Zn: 6) - Hoil-1 RING2 Domain Bound to Ubiquitin-Maltose (Maltose Not Modelled)
Other atoms:
Cl (1);
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9ehz (Zn: 8) - Cryo-Em Structure of Human Rna Polymerase II Elongation Complex in An Intermediate Translocation State
Other atoms:
Mg (1);
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9ei1 (Zn: 8) - Cryo-Em Structure of Human Rna Polymerase II Elongation Complex Bound to the RECQL5 Helicase in the Absence of Nucleotide
Other atoms:
Mg (1);
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9ei4 (Zn: 8) - Cryo-Em Structure of Human Rna Polymerase II Elongation Complex Bound to the RECQL5 Helicase in the Presence of Adp
Other atoms:
Mg (1);
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9eil (Zn: 1) - SIRT6 Bound to An H3K27AC Nucleosome
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9ekb (Zn: 1) - Cryo-Em Structure of Apo-Form Human Dna Polymerase Delta
Other atoms:
Fe (4);
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9ekk (Zn: 6) - Thomasclavelia Ramosa Immunoglobulin A Protease Middle (Protease) Domain with C-Terminal Domain #1 (Crystallized As Purified)
Other atoms:
Pr (4);
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9ekm (Zn: 2) - Thomasclavelia Ramosa Immunoglobulin A Protease Middle (Protease) Domain with C-Terminal Domain #1 (Metal Chelated)
Other atoms:
Pr (4);
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9ekn (Zn: 3) - Thomasclavelia Ramosa Immunoglobulin A Protease Middle (Protease) Domain with C-Terminal Domain #1 (Metal Chelated and Zinc Supplemented)
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9emg (Zn: 6) - SMNUC1 Nuclease From Stenotrophomonas Maltophilia in Complex with Guanosine-5'-Monophosphate As A Product of C-Di-Gmp Cleavage
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9emj (Zn: 2) - Sars-Cov-2 Methyltransferase NSP10-16 in Complex with Toyocamycin and M7GPPPA (CAP0-Analog)
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9eml (Zn: 2) - Sars-Cov-2 Methyltransferase NSP10-16 in Complex with Sam and M7GPPPA (CAP0-Analog)/M7GPPPAM (CAP1-Analog)
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9emv (Zn: 2) - Sars-Cov-2 NSP10-16 Methyltransferase in Complex with Sangivamycin and M7GPPPA (CAP0-Analog)/M7GPPPAM (CAP1-Analog)
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9ent (Zn: 2) - Ssx Structure of Autotaxin in Cryogenic Conditions
Other atoms:
Ca (1);
I (15);
Na (3);
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9erd (Zn: 1) - Human SLFN11 S753D Monomer
Other atoms:
Mg (2);
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9ere (Zn: 2) - SLFN11 Dimer Bound to Trna-Leu-Taa
Other atoms:
Mg (4);
Mn (3);
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9erf (Zn: 2) - SLFN11 Dimer Bound to Trna-Met-Cat
Other atoms:
Mn (3);
Mg (3);
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9esh (Zn: 6) - Structure of A B-State Intermediate Committed to Discard (Bd-I State)
Other atoms:
Mg (4);
K (1);
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9esi (Zn: 6) - Structure of A B-State Intermediate Committed to Discard (Bd-II State)
Other atoms:
Mg (4);
K (1);
Page generated: Mon Dec 15 11:45:37 2025
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