Zinc in PDB 9f7c: Sars-Cov-2 Nucleocapsid N-Terminal Domain (Ntd) Mutant S105I

The structure of Sars-Cov-2 Nucleocapsid N-Terminal Domain (Ntd) Mutant S105I, PDB code: 9f7c was solved by K.Dhamotharan, A.Schlundt, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	41.45 / 2.00
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	58.616, 58.616, 111.588, 90, 90, 90
R / Rfree (%)	24.1 / 27.3

The binding sites of Zinc atom in the Sars-Cov-2 Nucleocapsid N-Terminal Domain (Ntd) Mutant S105I (pdb code 9f7c). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Sars-Cov-2 Nucleocapsid N-Terminal Domain (Ntd) Mutant S105I, PDB code: 9f7c:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Sars-Cov-2 Nucleocapsid N-Terminal Domain (Ntd) Mutant S105I


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Sars-Cov-2 Nucleocapsid N-Terminal Domain (Ntd) Mutant S105I within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:50.6 occ:0.50 HE1 A:HIS59 1.9 65.1 1.0 OE2 A:GLU174 2.0 55.4 1.0 NE2 A:HIS59 2.2 62.6 1.0 CE1 A:HIS59 2.2 66.3 1.0 CD A:GLU174 2.8 54.6 1.0 OE1 A:GLU174 2.9 49.9 1.0 ND1 A:HIS59 3.5 71.8 1.0 HG21 A:THR57 3.5 53.6 1.0 CD2 A:HIS59 3.6 61.9 1.0 HB A:THR57 3.7 51.5 1.0 HH11 A:ARG107 4.1 81.9 1.0 CG A:HIS59 4.1 59.9 1.0 CG2 A:THR57 4.1 52.5 1.0 OG1 A:THR57 4.2 51.6 1.0 HD2 A:HIS59 4.2 63.6 1.0 HG23 A:THR57 4.2 53.5 1.0 CB A:THR57 4.2 51.3 1.0 CG A:GLU174 4.2 57.0 1.0 HB2 A:TYR172 4.4 55.4 1.0 HG3 A:GLU174 4.5 55.7 1.0 HG2 A:GLU174 4.5 54.4 1.0 NH1 A:ARG107 5.0 83.7 1.0

Zinc binding site 2 out of 2 in the Sars-Cov-2 Nucleocapsid N-Terminal Domain (Ntd) Mutant S105I


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Sars-Cov-2 Nucleocapsid N-Terminal Domain (Ntd) Mutant S105I within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn202 b:70.8 occ:1.00 NE2 A:HIS145 2.1 73.5 1.0 OD2 A:ASP82 2.3 73.6 1.0 CD2 A:HIS145 2.9 73.7 1.0 HD2 A:HIS145 3.0 74.2 1.0 CG A:ASP82 3.1 72.5 1.0 CE1 A:HIS145 3.2 75.9 1.0 OD1 A:ASP82 3.2 75.4 1.0 H A:SER79 3.4 72.8 1.0 HE1 A:HIS145 3.4 74.3 1.0 HD12 A:ILE146 3.6 74.5 1.0 HA A:SER78 3.7 73.2 1.0 HG13 A:ILE146 3.9 72.6 1.0 HB3 A:SER79 4.0 74.8 1.0 OG A:SER79 4.1 74.1 1.0 CG A:HIS145 4.1 72.7 1.0 HG12 A:ILE146 4.2 72.3 1.0 ND1 A:HIS145 4.2 73.3 1.0 N A:SER79 4.2 74.9 1.0 CG1 A:ILE146 4.4 70.0 1.0 CD1 A:ILE146 4.4 75.2 1.0 CB A:ASP82 4.5 70.0 1.0 CB A:SER79 4.5 72.6 1.0 HB2 A:SER78 4.6 71.6 1.0 CA A:SER78 4.6 69.8 1.0 HB3 A:ASP82 4.7 67.5 1.0 HB2 A:ASP82 4.7 69.5 1.0 HD13 A:ILE146 4.8 72.7 1.0 C A:SER78 5.0 72.0 1.0

K.Dhamotharan, A.Schlundt, S.Guenther. Structure of N-Terminal Domain Mutant S105I of Nucleocapsid Protein of Sars-Cov-2 To Be Published.