Atomistry » Zinc » PDB 9f3p-9fne » 9fk7
Atomistry »
  Zinc »
    PDB 9f3p-9fne »
      9fk7 »

Zinc in PDB 9fk7: The Structure of XT6 From G.Proteiniphilus T-6: the E265G/N158E Mutant

Enzymatic activity of The Structure of XT6 From G.Proteiniphilus T-6: the E265G/N158E Mutant

All present enzymatic activity of The Structure of XT6 From G.Proteiniphilus T-6: the E265G/N158E Mutant:
3.2.1.8;

Protein crystallography data

The structure of The Structure of XT6 From G.Proteiniphilus T-6: the E265G/N158E Mutant, PDB code: 9fk7 was solved by N.Hadad, O.Chmelnik, M.Dessau, Y.Shoham, G.Shoham, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.89 / 2.20
Space group I 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 89, 61.915, 110.912, 90, 105.13, 90
R / Rfree (%) 15.7 / 19.9

Other elements in 9fk7:

The structure of The Structure of XT6 From G.Proteiniphilus T-6: the E265G/N158E Mutant also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the The Structure of XT6 From G.Proteiniphilus T-6: the E265G/N158E Mutant (pdb code 9fk7). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 7 binding sites of Zinc where determined in the The Structure of XT6 From G.Proteiniphilus T-6: the E265G/N158E Mutant, PDB code: 9fk7:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7;

Zinc binding site 1 out of 7 in 9fk7

Go back to Zinc Binding Sites List in 9fk7
Zinc binding site 1 out of 7 in the The Structure of XT6 From G.Proteiniphilus T-6: the E265G/N158E Mutant


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Structure of XT6 From G.Proteiniphilus T-6: the E265G/N158E Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn404

b:19.4
occ:1.00
 OE1 A:GLU58 1.8 30.9 1.0
O A:HOH516 2.0 21.3 1.0
NE2 A:HIS322 2.0 17.3 1.0
CL A:CL402 2.2 22.5 1.0
CD A:GLU58 2.6 28.6 1.0
CE1 A:HIS322 2.7 22.4 1.0
OE2 A:GLU58 2.9 19.3 1.0
CD2 A:HIS322 3.1 15.6 1.0
OE2 A:GLU35 3.8 29.2 1.0
CG A:GLU35 3.8 19.3 1.0
ND1 A:HIS322 3.9 25.1 1.0
CG A:GLU58 4.0 26.5 1.0
CG A:HIS322 4.1 18.3 1.0
O A:HOH791 4.2 25.0 1.0
CD A:GLU35 4.3 25.8 1.0
O A:HOH690 4.4 10.2 1.0
ND2 A:ASN59 4.6 23.0 1.0
O A:HOH874 4.8 33.5 1.0
O A:HOH814 4.8 30.9 1.0
O A:HOH739 4.8 15.2 1.0
N A:TRP324 5.0 9.1 1.0

Zinc binding site 2 out of 7 in 9fk7

Go back to Zinc Binding Sites List in 9fk7
Zinc binding site 2 out of 7 in the The Structure of XT6 From G.Proteiniphilus T-6: the E265G/N158E Mutant


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The Structure of XT6 From G.Proteiniphilus T-6: the E265G/N158E Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn405

b:27.7
occ:1.00
 OE1 A:GLU158 2.0 18.9 1.0
NE2 A:HIS95 2.1 21.8 1.0
O A:HOH842 2.3 24.8 1.0
NZ A:LYS62 2.6 39.7 1.0
CD A:GLU158 2.7 18.3 1.0
OE2 A:GLU158 2.8 18.9 1.0
CD2 A:HIS95 2.9 13.3 1.0
CE1 A:HIS95 3.1 14.2 1.0
O A:HOH737 3.3 29.5 1.0
CE A:LYS62 3.4 34.3 1.0
O A:HOH750 4.0 23.6 1.0
CG A:HIS95 4.1 15.7 1.0
ND1 A:HIS95 4.1 8.0 1.0
CG A:GLU158 4.2 14.9 1.0
CH2 A:TRP99 4.2 29.4 1.0
O A:HOH520 4.2 24.6 1.0
OG1 A:THR96 4.3 17.1 1.0
CZ2 A:TRP99 4.3 25.5 1.0
CZ3 A:TRP99 4.4 28.9 1.0
CE2 A:TRP99 4.5 17.9 1.0
CE3 A:TRP99 4.6 25.6 1.0
CD2 A:TRP99 4.6 20.6 1.0
NE2 A:GLN234 4.8 12.0 1.0
CZ2 A:TRP316 4.9 18.3 1.0
CD A:LYS62 4.9 34.0 1.0
CH2 A:TRP316 4.9 14.2 1.0

Zinc binding site 3 out of 7 in 9fk7

Go back to Zinc Binding Sites List in 9fk7
Zinc binding site 3 out of 7 in the The Structure of XT6 From G.Proteiniphilus T-6: the E265G/N158E Mutant


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of The Structure of XT6 From G.Proteiniphilus T-6: the E265G/N158E Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn406

b:14.1
occ:1.00
 O A:HOH859 2.0 12.4 1.0
O A:HOH547 2.1 8.9 1.0
O A:HOH639 2.1 9.0 1.0
OD2 A:ASP21 2.1 14.4 1.0
O A:HOH713 2.1 12.8 1.0
O A:HOH804 2.2 12.9 1.0
CG A:ASP21 3.1 14.4 1.0
OD1 A:ASP21 3.4 9.7 1.0
O A:HOH828 4.0 29.8 1.0
O A:HOH628 4.2 13.0 1.0
O A:PHE52 4.2 9.8 1.0
O A:LYS49 4.2 12.0 1.0
O A:HOH830 4.2 20.5 1.0
O A:HOH813 4.2 25.1 1.0
O A:ARG50 4.4 12.6 1.0
CB A:ASP21 4.4 9.4 1.0
NE2 A:GLN22 4.5 18.0 1.0
CB A:ASN53 4.7 10.2 1.0
CG A:GLN22 4.8 14.1 1.0
C A:PHE52 4.8 10.6 1.0
C A:ARG50 5.0 11.5 1.0

Zinc binding site 4 out of 7 in 9fk7

Go back to Zinc Binding Sites List in 9fk7
Zinc binding site 4 out of 7 in the The Structure of XT6 From G.Proteiniphilus T-6: the E265G/N158E Mutant


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of The Structure of XT6 From G.Proteiniphilus T-6: the E265G/N158E Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn407

b:82.3
occ:1.00
 CE1 A:HIS378 2.5 21.9 1.0
O A:HOH843 2.8 33.0 1.0
ND1 A:HIS378 3.4 17.6 1.0
NE2 A:HIS378 3.5 22.6 1.0
O A:HOH800 3.8 27.0 1.0
O A:ARG23 4.1 14.2 1.0
NH1 A:ARG23 4.3 14.8 1.0
CD A:ARG23 4.3 13.2 1.0
ZN A:ZN409 4.4 50.2 1.0
CG A:HIS378 4.6 18.1 1.0
CD2 A:HIS378 4.6 16.9 1.0
CZ A:ARG23 4.7 15.0 1.0
NE A:ARG23 4.7 14.1 1.0
CL A:CL403 4.7 15.1 1.0
O A:HOH630 4.8 14.4 1.0

Zinc binding site 5 out of 7 in 9fk7

Go back to Zinc Binding Sites List in 9fk7
Zinc binding site 5 out of 7 in the The Structure of XT6 From G.Proteiniphilus T-6: the E265G/N158E Mutant


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of The Structure of XT6 From G.Proteiniphilus T-6: the E265G/N158E Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn408

b:13.9
occ:1.00
 OE2 A:GLU27 2.0 14.1 1.0
CL A:CL403 2.3 15.1 1.0
CD A:GLU27 2.9 14.5 1.0
OE1 A:GLU27 3.0 11.7 1.0
O A:HOH519 4.0 16.5 1.0
CB A:ASN26 4.0 14.2 1.0
O A:HOH630 4.2 14.4 1.0
CG A:GLU27 4.3 14.5 1.0
ND2 A:ASN26 4.5 16.4 1.0
CG A:ASN26 4.8 19.5 1.0
C A:ASN26 4.9 14.8 1.0

Zinc binding site 6 out of 7 in 9fk7

Go back to Zinc Binding Sites List in 9fk7
Zinc binding site 6 out of 7 in the The Structure of XT6 From G.Proteiniphilus T-6: the E265G/N158E Mutant


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of The Structure of XT6 From G.Proteiniphilus T-6: the E265G/N158E Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn409

b:50.2
occ:1.00
 NE2 A:HIS378 2.1 22.6 1.0
O A:HOH524 2.6 26.3 1.0
CD2 A:HIS378 3.0 16.9 1.0
CE1 A:HIS378 3.2 21.9 1.0
CG A:HIS378 4.2 18.1 1.0
ND1 A:HIS378 4.2 17.6 1.0
CD A:ARG23 4.4 13.2 1.0
ZN A:ZN407 4.4 82.3 1.0
O A:ILE376 4.5 12.6 1.0
O A:HOH843 4.7 33.0 1.0
NE A:ARG23 4.9 14.1 1.0

Zinc binding site 7 out of 7 in 9fk7

Go back to Zinc Binding Sites List in 9fk7
Zinc binding site 7 out of 7 in the The Structure of XT6 From G.Proteiniphilus T-6: the E265G/N158E Mutant


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of The Structure of XT6 From G.Proteiniphilus T-6: the E265G/N158E Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn410

b:33.5
occ:1.00
 O A:ALA374 2.3 14.2 1.0
OD1 A:ASP297 2.4 21.8 1.0
O A:HOH534 2.5 16.2 1.0
OD1 A:ASP377 2.5 19.8 1.0
O A:LYS379 2.5 23.1 1.0
O A:HOH550 2.5 18.3 1.0
O A:HOH653 2.6 11.5 1.0
CG A:ASP297 3.5 16.4 1.0
C A:ALA374 3.5 14.5 1.0
CG A:ASP377 3.6 19.5 1.0
C A:LYS379 3.6 30.3 1.0
OD2 A:ASP377 3.9 19.8 1.0
CE A:LYS301 4.2 30.2 1.0
OXT A:LYS379 4.2 40.6 1.0
N A:LYS379 4.2 21.5 1.0
O A:HOH743 4.3 13.3 1.0
CB A:ASP297 4.3 15.6 1.0
NZ A:LYS301 4.3 26.0 1.0
CA A:ALA374 4.4 15.1 1.0
CA A:ASP297 4.4 13.8 1.0
OD2 A:ASP297 4.4 26.2 1.0
CA A:ILE375 4.4 12.6 1.0
N A:ILE375 4.4 10.1 1.0
O A:ASP377 4.5 15.3 1.0
CA A:LYS379 4.5 25.7 1.0
O A:ASP297 4.6 14.0 1.0
C A:ASP377 4.8 21.8 1.0
CB A:ASP377 4.9 16.8 1.0
C A:ASP297 4.9 14.0 1.0

Reference:

N.Hadad, O.Chmelnik, M.Dessau, Y.Shoham, G.Shoham. The Structure of XT6 From G.Proteiniphilus T-6: the E265G/N158E Mutant To Be Published.
Page generated: Fri Aug 22 17:31:22 2025

Last articles

Br in 9R0Q
Br in 9J73
Br in 9BJ5
Br in 8Y72
Au in 9D33
As in 9O9I
Al in 9GSG
Zr in 1XC1
Zr in 6Y7P
Zr in 6GNL
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy