Zinc in PDB 9f7a: Sars-Cov-2 Nucleocapsid N-Terminal Domain (Ntd) Mutant P80R

The structure of Sars-Cov-2 Nucleocapsid N-Terminal Domain (Ntd) Mutant P80R, PDB code: 9f7a was solved by K.Dhamotharan, A.Schlundt, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	57.81 / 1.90
Space group	P 65 2 2
Cell size a, b, c (Å), α, β, γ (°)	66.753, 66.753, 121.214, 90, 90, 120
R / Rfree (%)	27.7 / 34.8

The binding sites of Zinc atom in the Sars-Cov-2 Nucleocapsid N-Terminal Domain (Ntd) Mutant P80R (pdb code 9f7a). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Sars-Cov-2 Nucleocapsid N-Terminal Domain (Ntd) Mutant P80R, PDB code: 9f7a:

Zinc binding site 1 out of 1 in the Sars-Cov-2 Nucleocapsid N-Terminal Domain (Ntd) Mutant P80R


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Sars-Cov-2 Nucleocapsid N-Terminal Domain (Ntd) Mutant P80R within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:65.5 occ:1.00 OD2 A:ASP82 1.8 47.3 1.0 NE2 A:HIS145 2.0 64.6 1.0 CG A:ASP82 2.7 62.1 1.0 HD12 A:ILE146 2.9 71.5 1.0 CD2 A:HIS145 2.9 61.8 1.0 CE1 A:HIS145 3.0 72.4 1.0 OD1 A:ASP82 3.0 65.3 1.0 HD2 A:HIS145 3.1 60.8 1.0 H A:SER79 3.2 60.3 1.0 HE1 A:HIS145 3.3 67.5 1.0 OG A:SER79 3.6 54.2 1.0 CD1 A:ILE146 3.8 74.1 1.0 HB3 A:SER79 3.8 59.4 1.0 HA A:SER78 3.9 62.1 1.0 N A:SER79 4.1 61.1 1.0 HD13 A:ILE146 4.1 71.6 1.0 CG A:HIS145 4.1 54.8 1.0 ND1 A:HIS145 4.1 60.6 1.0 CB A:ASP82 4.1 53.6 1.0 CB A:SER79 4.2 61.7 1.0 HG12 A:ILE146 4.3 67.3 1.0 HB2 A:ASP82 4.3 55.2 1.0 HB3 A:ASP82 4.4 55.2 1.0 HD11 A:ILE146 4.4 71.7 1.0 CG1 A:ILE146 4.6 66.6 1.0 CA A:SER79 4.8 59.8 1.0 HG13 A:ILE146 4.8 67.4 1.0 CA A:SER78 4.8 65.1 1.0 HB2 A:SER78 4.9 59.1 1.0 C A:SER78 4.9 58.7 1.0 HB2 A:ASP81 5.0 59.1 1.0

K.Dhamotharan, A.Schlundt, S.Guenther. Structure of N-Terminal Domain Mutant P80R of Nucleocapsid Protein of Sars-Cov-2 To Be Published.