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Zinc in PDB 9flz: Alcohol Dehydrogenase

Enzymatic activity of Alcohol Dehydrogenase

All present enzymatic activity of Alcohol Dehydrogenase:
1.1.1.1;

Zinc Binding Sites:

The binding sites of Zinc atom in the Alcohol Dehydrogenase (pdb code 9flz). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 8 binding sites of Zinc where determined in the Alcohol Dehydrogenase, PDB code: 9flz:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Zinc binding site 1 out of 8 in 9flz

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Zinc binding site 1 out of 8 in the Alcohol Dehydrogenase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Alcohol Dehydrogenase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1001

b:37.8
occ:1.00
 SG A:CYS96 2.3 23.5 1.0
SG A:CYS102 2.3 19.4 1.0
SG A:CYS99 2.3 21.0 1.0
SG A:CYS110 2.3 21.9 1.0
CB A:CYS110 3.2 21.9 1.0
CB A:CYS96 3.2 23.5 1.0
CB A:CYS99 3.3 21.0 1.0
CB A:CYS102 3.4 19.4 1.0
N A:CYS96 3.6 23.5 1.0
N A:GLY97 3.7 22.9 1.0
N A:CYS99 3.8 21.0 1.0
CA A:CYS96 3.8 23.5 1.0
CA A:CYS110 4.0 21.9 1.0
N A:CYS102 4.1 19.4 1.0
CA A:CYS99 4.1 21.0 1.0
C A:CYS96 4.2 23.5 1.0
CA A:CYS102 4.4 19.4 1.0
N A:HIS98 4.5 24.0 1.0
CB A:ALA95 4.6 22.7 1.0
C A:ALA95 4.6 22.7 1.0
C A:CYS99 4.7 21.0 1.0
CA A:GLY97 4.7 22.9 1.0
O A:CYS99 4.8 21.0 1.0
C A:GLY97 4.9 22.9 1.0
C A:CYS110 4.9 21.9 1.0
C A:HIS98 5.0 24.0 1.0

Zinc binding site 2 out of 8 in 9flz

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Zinc binding site 2 out of 8 in the Alcohol Dehydrogenase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Alcohol Dehydrogenase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1002

b:53.7
occ:1.00
 NE2 A:HIS65 2.3 32.9 1.0
SG A:CYS152 2.3 27.7 1.0
CD2 A:HIS65 2.5 32.9 1.0
CB A:CYS152 3.0 27.7 1.0
O A:HOH1101 3.1 32.8 1.0
CE1 A:HIS65 3.6 32.9 1.0
SG A:CYS42 3.7 41.7 1.0
CG A:HIS65 3.8 32.9 1.0
CB A:CYS42 4.1 41.7 1.0
CA A:CYS152 4.1 27.7 1.0
ND1 A:HIS65 4.3 32.9 1.0
OG1 A:THR44 4.3 40.2 1.0
CB A:THR44 4.3 40.2 1.0
OE2 A:GLU66 4.5 32.5 1.0
CG2 A:VAL292 4.7 24.8 1.0
C A:CYS152 4.8 27.7 1.0
CG2 A:THR44 4.8 40.2 1.0
CB A:TRP91 5.0 25.6 1.0
CB A:HIS65 5.0 32.9 1.0

Zinc binding site 3 out of 8 in 9flz

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Zinc binding site 3 out of 8 in the Alcohol Dehydrogenase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Alcohol Dehydrogenase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn1001

b:42.3
occ:1.00
 SG B:CYS96 2.3 26.5 1.0
SG B:CYS99 2.3 23.1 1.0
SG B:CYS110 2.3 23.6 1.0
SG B:CYS102 2.3 21.2 1.0
CB B:CYS110 3.1 23.6 1.0
CB B:CYS99 3.4 23.1 1.0
CB B:CYS96 3.5 26.5 1.0
CB B:CYS102 3.6 21.2 1.0
N B:CYS96 3.8 26.5 1.0
N B:GLY97 3.8 25.4 1.0
N B:CYS99 3.9 23.1 1.0
O B:HOH1102 4.0 23.2 1.0
CA B:CYS110 4.1 23.6 1.0
CA B:CYS96 4.1 26.5 1.0
N B:CYS102 4.1 21.2 1.0
CA B:CYS99 4.2 23.1 1.0
C B:CYS96 4.4 26.5 1.0
CA B:CYS102 4.5 21.2 1.0
N B:HIS98 4.5 26.9 1.0
CB B:ALA95 4.6 24.4 1.0
CA B:GLY97 4.8 25.4 1.0
C B:ALA95 4.8 24.4 1.0
C B:CYS99 4.9 23.1 1.0
N B:GLU111 4.9 25.3 1.0
CB B:HIS101 4.9 20.3 1.0

Zinc binding site 4 out of 8 in 9flz

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Zinc binding site 4 out of 8 in the Alcohol Dehydrogenase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Alcohol Dehydrogenase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn1002

b:52.5
occ:1.00
 NE2 B:HIS65 2.3 28.3 1.0
SG B:CYS42 2.3 38.7 1.0
SG B:CYS152 2.3 26.6 1.0
CB B:CYS42 2.5 38.7 1.0
CE1 B:HIS65 3.0 28.3 1.0
OE2 B:GLU66 3.2 29.3 1.0
CB B:CYS152 3.3 26.6 1.0
CD2 B:HIS65 3.4 28.3 1.0
OG1 B:THR44 4.1 37.5 1.0
CA B:CYS42 4.1 38.7 1.0
CB B:THR44 4.1 37.5 1.0
NH2 B:ARG337 4.1 34.7 1.0
ND1 B:HIS65 4.2 28.3 1.0
CD B:GLU66 4.2 29.3 1.0
CG B:HIS65 4.4 28.3 1.0
O B:HOH1103 4.7 27.7 1.0
CA B:CYS152 4.8 26.6 1.0
N B:THR44 4.8 37.5 1.0
C B:CYS42 4.8 38.7 1.0
N B:CYS42 4.8 38.7 1.0
CG B:GLU66 4.9 29.3 1.0
CG2 B:THR44 5.0 37.5 1.0

Zinc binding site 5 out of 8 in 9flz

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Zinc binding site 5 out of 8 in the Alcohol Dehydrogenase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Alcohol Dehydrogenase within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn1001

b:39.3
occ:1.00
 SG C:CYS96 2.3 27.5 1.0
SG C:CYS99 2.3 25.0 1.0
SG C:CYS102 2.3 23.6 1.0
SG C:CYS110 2.3 24.2 1.0
CB C:CYS110 3.2 24.2 1.0
CB C:CYS99 3.3 25.0 1.0
CB C:CYS102 3.4 23.6 1.0
CB C:CYS96 3.4 27.5 1.0
N C:CYS96 3.7 27.5 1.0
N C:GLY97 3.8 27.1 1.0
N C:CYS99 3.9 25.0 1.0
CA C:CYS96 4.0 27.5 1.0
N C:CYS102 4.1 23.6 1.0
CA C:CYS110 4.1 24.2 1.0
CA C:CYS99 4.2 25.0 1.0
CA C:CYS102 4.3 23.6 1.0
C C:CYS96 4.3 27.5 1.0
N C:HIS98 4.5 28.6 1.0
CB C:ALA95 4.6 25.3 1.0
C C:ALA95 4.7 25.3 1.0
CA C:GLY97 4.7 27.1 1.0
C C:CYS99 4.8 25.0 1.0
O C:CYS99 4.9 25.0 1.0
C C:GLY97 5.0 27.1 1.0

Zinc binding site 6 out of 8 in 9flz

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Zinc binding site 6 out of 8 in the Alcohol Dehydrogenase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Alcohol Dehydrogenase within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn1002

b:53.0
occ:1.00
 NE2 C:HIS65 2.3 32.5 1.0
SG C:CYS42 2.3 42.6 1.0
SG C:CYS152 2.3 29.0 1.0
CB C:CYS42 2.5 42.6 1.0
CE1 C:HIS65 2.9 32.5 1.0
OE2 C:GLU66 3.3 33.0 1.0
CD2 C:HIS65 3.4 32.5 1.0
CB C:CYS152 3.5 29.0 1.0
NH2 C:ARG337 3.6 38.1 1.0
CA C:CYS42 4.0 42.6 1.0
O C:HOH1101 4.0 31.8 1.0
ND1 C:HIS65 4.1 32.5 1.0
OG1 C:THR44 4.1 40.9 1.0
CB C:THR44 4.2 40.9 1.0
CG C:HIS65 4.4 32.5 1.0
CD C:GLU66 4.5 33.0 1.0
N C:CYS42 4.7 42.6 1.0
N C:THR44 4.8 40.9 1.0
C C:CYS42 4.8 42.6 1.0
CZ C:ARG337 4.8 38.1 1.0
CA C:CYS152 4.9 29.0 1.0
N C:HIS43 5.0 45.3 1.0

Zinc binding site 7 out of 8 in 9flz

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Zinc binding site 7 out of 8 in the Alcohol Dehydrogenase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Alcohol Dehydrogenase within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn1001

b:40.2
occ:1.00
 SG D:CYS102 2.3 21.9 1.0
SG D:CYS99 2.3 23.9 1.0
SG D:CYS96 2.3 28.9 1.0
SG D:CYS110 2.3 22.7 1.0
CB D:CYS99 3.2 23.9 1.0
CB D:CYS110 3.3 22.7 1.0
CB D:CYS102 3.5 21.9 1.0
CB D:CYS96 3.6 28.9 1.0
N D:CYS99 3.7 23.9 1.0
N D:CYS96 3.8 28.9 1.0
N D:GLY97 4.0 28.1 1.0
CA D:CYS99 4.0 23.9 1.0
CA D:CYS96 4.2 28.9 1.0
CA D:CYS110 4.2 22.7 1.0
N D:CYS102 4.2 21.9 1.0
CA D:CYS102 4.4 21.9 1.0
CB D:ALA95 4.5 26.1 1.0
N D:HIS98 4.6 28.6 1.0
C D:CYS96 4.6 28.9 1.0
C D:CYS99 4.7 23.9 1.0
C D:ALA95 4.8 26.1 1.0
O D:CYS99 4.9 23.9 1.0
N D:GLU111 4.9 25.5 1.0
C D:HIS98 4.9 28.6 1.0
CA D:GLY97 5.0 28.1 1.0

Zinc binding site 8 out of 8 in 9flz

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Zinc binding site 8 out of 8 in the Alcohol Dehydrogenase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Alcohol Dehydrogenase within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn1002

b:60.0
occ:1.00
 SG D:CYS152 2.3 26.6 1.0
SG D:CYS42 2.3 41.5 1.0
NE2 D:HIS65 2.3 30.6 1.0
CB D:CYS42 2.6 41.5 1.0
CE1 D:HIS65 2.8 30.6 1.0
O D:HOH1101 3.0 32.7 1.0
CB D:CYS152 3.4 26.6 1.0
CD2 D:HIS65 3.5 30.6 1.0
ND1 D:HIS65 4.1 30.6 1.0
OG1 D:THR44 4.1 38.9 1.0
CA D:CYS42 4.2 41.5 1.0
NH2 D:ARG337 4.2 37.9 1.0
CB D:THR44 4.3 38.9 1.0
OE1 D:GLU66 4.3 30.9 1.0
CG D:HIS65 4.4 30.6 1.0
CD D:GLU66 4.7 30.9 1.0
CA D:CYS152 4.7 26.6 1.0
N D:THR44 4.9 38.9 1.0
N D:CYS42 4.9 41.5 1.0
NH1 D:ARG337 4.9 37.9 1.0
C D:CYS42 5.0 41.5 1.0

Reference:

M.H.Lamers, L.Schada Von Borzyskowski, M.Ren. Nad-Dependent Dehydrogenase To Be Published.
Page generated: Fri Aug 22 17:32:43 2025

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