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Zinc in PDB, part 554 (files: 22121-22160), PDB 9g97-9iyx

Experimental structures of coordination spheres of Zinc (Zn) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Zinc atoms. PDB files: 22121-22160 (PDB 9g97-9iyx).
  1. 9g97 (Zn: 1) - Lipid III Flippase Wzxe with NB10 Nanobody in Outward-Facing Conformation at 0.9688 A
    Other atoms: Cl (3);
  2. 9gaw (Zn: 6) - High-Resolution Structure of the Anaphase-Promoting Complex/Cyclosome (Apc/C) Bound to Co-Activator CDH1
  3. 9gbf (Zn: 8) - X-Ray Structure of PHDVC5HCH Tandem Domain of NSD2
    Other atoms: Na (2);
  4. 9gbo (Zn: 1) - Human Angiotensin-1 Converting Enzyme C-Domain in Complex with A Diprolyl Inhibitor- SG16
    Other atoms: Cl (2);
  5. 9gku (Zn: 8) - Crystal Structure of Propanil Hydrolase (Prph) From Sphingomonas Sp. Y57
    Other atoms: K (8);
  6. 9gkv (Zn: 2) - Crystal Structure of Deacetylase (Hdah) From Vibrio Cholerae in Complex with Saha
    Other atoms: K (8);
  7. 9gkw (Zn: 4) - Crystal Structure of Dimethoate Hydrolase (Dmha) of Rhizorhabdus Wittichii in Complex with Octanoic Acid
    Other atoms: K (10);
  8. 9gkx (Zn: 4) - Crystal Structure of Rhizorhabdus Wittichii Dimethoate Hydrolase (Dmha) in Complex with Saha
    Other atoms: K (4);
  9. 9gky (Zn: 2) - Crystal Structure of Histone Deacetylase (Hdah) From Vibrio Cholerae in Complex with Decanoic Acid
    Other atoms: Na (2); K (9);
  10. 9gkz (Zn: 2) - Crystal Structure of Acetylpolyamine Amidohydrolase (Apah) From Pseudomonas Sp. M30-35
    Other atoms: K (6); Cl (1);
  11. 9gl0 (Zn: 4) - Crystal Structure of Acetylpolyamine Aminohydrolase (Apah) From Legionella Pneumophila
    Other atoms: K (2);
  12. 9gl1 (Zn: 1) - Crystal Structure of Acetylpolyamine Aminohydrolase (Apah) From Legionella Cherrii
    Other atoms: K (2);
  13. 9glb (Zn: 1) - Crystal Structure of Deacetylase (Hdah) From Klebsiella Pneumoniae Subsp. Ozaenae
    Other atoms: K (3);
  14. 9gle (Zn: 2) - Jumonji Domain-Containing Protein 2A with Crystallization Epitope Mutations A91T:T93S
    Other atoms: Ni (2);
  15. 9gmw (Zn: 2) - SLFN11 Wt Dimer Bound to Trna-Leu-Taa (Pre-Cleavage State)
    Other atoms: Mg (4); Mn (3);
  16. 9gmx (Zn: 2) - SLFN11 Wt Dimer Bound to Trna-Leu-Taa (Post-Cleavage State)
    Other atoms: Mg (4); Mn (2);
  17. 9gn1 (Zn: 2) - Crystal Structure of Inactive Deacetylase (Hdah) H144A From Klebsiella Pneumoniae Subsp. Ozaenae
    Other atoms: K (2);
  18. 9gn6 (Zn: 1) - Crystal Structure of Deacetylase (Hdah) From Klebsiella Pneumoniae Subsp. Ozaenae in Complex with the Inhibitor Saha
    Other atoms: K (2);
  19. 9gn7 (Zn: 1) - Crystal Structure of Deacetylase (Hdah) From Klebsiella Pneumoniae Subsp. Ozaenae in Complex with the Inhibitor Tsa
    Other atoms: K (2);
  20. 9gny (Zn: 2) - Sars-Cov-2 Methyltransferase NSP10-16 in Complex with Sam and Caffeine
    Other atoms: Cl (1);
  21. 9gp1 (Zn: 4) - Jumonji Domain-Containing Protein 2A with Crystallization Epitope Mutatios K330R:A334E
    Other atoms: Ni (4);
  22. 9grq (Zn: 2) - Sars-Cov-2 Methyltransferase NSP10-16 in Complex with Sam and Theophylline
    Other atoms: Na (2);
  23. 9gur (Zn: 2) - 30S Mrna Delivery Complex Tec Resolved (Tec Only)
    Other atoms: Mg (1);
  24. 9guw (Zn: 3) - 30S-Tec (Tec in Expressome Position) Inactive State 2
    Other atoms: Mg (118);
  25. 9gux (Zn: 2) - 30S-Tec (Tec in Expressome Position) Inactive State 1
    Other atoms: Mg (132);
  26. 9h3h (Zn: 1) - Human Carbonic Anhydrase II Crystallization and Structure Determination at Room Temperature in the Crystalchip
  27. 9hnw (Zn: 1) - USP1-UAF1 Bound to LYS63-Linked Diubiquitin
  28. 9icf (Zn: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex + 2'- Deoxyadenosine-5'-Triphosphate, Soaked in the Presence of Datp and ZNCL2
    Other atoms: Na (2);
  29. 9icg (Zn: 3) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Dctp (1 Millimolar) and ZNCL2 (1 Millimolar)
    Other atoms: Na (2);
  30. 9ich (Zn: 3) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Dgtp (1 Millimolar) and ZNCL2 (1 Millimolar)
    Other atoms: Na (2);
  31. 9ici (Zn: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Dttp (1 Millimolar) and ZNCL2 (1 Millimolar)
    Other atoms: Na (2);
  32. 9icv (Zn: 3) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex + 2'- Deoxyadenosine-5'-Triphosphate, Soaked in the Presence of Datp and ZNCL2
    Other atoms: Na (2);
  33. 9ild (Zn: 1) - Complex Structure of CAP3 and Cd-Ntase
  34. 9ipu (Zn: 2) - Cryo-Em Structure of the RNF168(1-193)/UBCH5C-Ub Ubiquitylation Module Bound to H1.0-K63-UB3 Modified Chromatosome
  35. 9ir3 (Zn: 2) - Cryo-Em Structure of Nipah Virus L-P Polymerase Complex
  36. 9ir4 (Zn: 2) - Cryo-Em Structure of Nipah Virus L-P (H1165Y) Polymerase Complex
  37. 9irq (Zn: 2) - Alginate Lyase (Microbulbifer Sp. ALW1)
  38. 9iuu (Zn: 1) - Jn.1 Rbd with Q493E in Complex with ACE2
    Other atoms: Cl (1);
  39. 9iyk (Zn: 13) - Crystal Structure of HSOD1 in C121 Space Group
    Other atoms: Cu (12);
  40. 9iyx (Zn: 2) - Structure of Hbv Surface Antigen Determined in Recombinant Spherical Subviral Particle
Page generated: Tue Feb 25 12:13:15 2025

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