Zinc in PDB 9iyk: Crystal Structure of HSOD1 in C121 Space Group
Enzymatic activity of Crystal Structure of HSOD1 in C121 Space Group
All present enzymatic activity of Crystal Structure of HSOD1 in C121 Space Group:
1.15.1.1;
Protein crystallography data
The structure of Crystal Structure of HSOD1 in C121 Space Group, PDB code: 9iyk
was solved by
I.Yapici,
H.Demirci,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
48.92 /
2.34
|
|
Space group
|
C 1 2 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
178.19,
138.25,
112.93,
90,
129.2,
90
|
|
R / Rfree (%)
|
19.8 /
26.3
|
Other elements in 9iyk:
The structure of Crystal Structure of HSOD1 in C121 Space Group also contains other interesting chemical elements:
Zinc Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
13;
Binding sites:
The binding sites of Zinc atom in the Crystal Structure of HSOD1 in C121 Space Group
(pdb code 9iyk). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 13 binding sites of Zinc where determined in the
Crystal Structure of HSOD1 in C121 Space Group, PDB code: 9iyk:
Jump to Zinc binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Zinc binding site 1 out
of 13 in 9iyk
Go back to
Zinc Binding Sites List in 9iyk
Zinc binding site 1 out
of 13 in the Crystal Structure of HSOD1 in C121 Space Group
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Crystal Structure of HSOD1 in C121 Space Group within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn202
b:32.5
occ:1.00
|
OD1
|
A:ASP83
|
1.9
|
44.2
|
1.0
|
|
ND1
|
A:HIS80
|
1.9
|
32.9
|
1.0
|
|
ND1
|
A:HIS71
|
2.1
|
49.5
|
1.0
|
|
ND1
|
A:HIS63
|
2.3
|
33.2
|
1.0
|
|
OD2
|
A:ASP83
|
2.3
|
45.3
|
1.0
|
|
CG
|
A:ASP83
|
2.4
|
45.0
|
1.0
|
|
CE1
|
A:HIS80
|
2.8
|
36.4
|
1.0
|
|
CE1
|
A:HIS71
|
2.9
|
42.3
|
1.0
|
|
CG
|
A:HIS80
|
3.0
|
33.3
|
1.0
|
|
CG
|
A:HIS63
|
3.2
|
42.2
|
1.0
|
|
CG
|
A:HIS71
|
3.2
|
42.4
|
1.0
|
|
CE1
|
A:HIS63
|
3.3
|
42.4
|
1.0
|
|
CB
|
A:HIS63
|
3.4
|
37.9
|
1.0
|
|
CB
|
A:HIS80
|
3.4
|
34.1
|
1.0
|
|
CB
|
A:HIS71
|
3.7
|
37.1
|
1.0
|
|
CB
|
A:ASP83
|
3.9
|
39.4
|
1.0
|
|
NE2
|
A:HIS80
|
4.0
|
37.3
|
1.0
|
|
CA
|
A:HIS71
|
4.0
|
36.5
|
1.0
|
|
O
|
A:LYS136
|
4.0
|
43.9
|
1.0
|
|
CD2
|
A:HIS80
|
4.1
|
35.0
|
1.0
|
|
NE2
|
A:HIS71
|
4.1
|
41.0
|
1.0
|
|
CD2
|
A:HIS71
|
4.3
|
37.6
|
1.0
|
|
CD2
|
A:HIS63
|
4.3
|
46.8
|
1.0
|
|
CD2
|
A:HIS46
|
4.3
|
46.4
|
1.0
|
|
NE2
|
A:HIS63
|
4.3
|
41.8
|
1.0
|
|
CA
|
A:ASP83
|
4.6
|
40.1
|
1.0
|
|
CA
|
A:HIS80
|
4.7
|
35.8
|
1.0
|
|
N
|
A:GLY72
|
4.7
|
39.6
|
1.0
|
|
N
|
A:HIS80
|
4.7
|
37.1
|
1.0
|
|
CA
|
A:HIS63
|
4.9
|
35.8
|
1.0
|
|
C
|
A:HIS71
|
4.9
|
38.8
|
1.0
|
|
N
|
A:ASP83
|
4.9
|
44.4
|
1.0
|
|
Zinc binding site 2 out
of 13 in 9iyk
Go back to
Zinc Binding Sites List in 9iyk
Zinc binding site 2 out
of 13 in the Crystal Structure of HSOD1 in C121 Space Group
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Crystal Structure of HSOD1 in C121 Space Group within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn203
b:59.2
occ:1.00
|
NE2
|
A:HIS110
|
2.0
|
49.1
|
1.0
|
|
NE2
|
D:HIS-1
|
2.1
|
66.0
|
1.0
|
|
NE2
|
C:HIS110
|
2.2
|
50.7
|
1.0
|
|
NE2
|
B:HIS-1
|
2.4
|
59.5
|
1.0
|
|
CD2
|
B:HIS-1
|
2.8
|
56.7
|
1.0
|
|
CE1
|
A:HIS110
|
2.9
|
54.8
|
1.0
|
|
CE1
|
C:HIS110
|
2.9
|
43.3
|
1.0
|
|
CD2
|
D:HIS-1
|
3.0
|
62.4
|
1.0
|
|
CD2
|
A:HIS110
|
3.0
|
60.8
|
1.0
|
|
CE1
|
D:HIS-1
|
3.1
|
57.4
|
1.0
|
|
CD2
|
C:HIS110
|
3.3
|
56.5
|
1.0
|
|
CE1
|
B:HIS-1
|
3.6
|
52.4
|
1.0
|
|
ND1
|
A:HIS110
|
4.0
|
53.8
|
1.0
|
|
CG
|
A:HIS110
|
4.1
|
57.0
|
1.0
|
|
ND1
|
C:HIS110
|
4.1
|
46.1
|
1.0
|
|
CG
|
B:HIS-1
|
4.1
|
53.6
|
1.0
|
|
CG
|
D:HIS-1
|
4.1
|
63.0
|
1.0
|
|
CB
|
A:PRO66
|
4.1
|
47.7
|
1.0
|
|
ND1
|
D:HIS-1
|
4.1
|
60.7
|
1.0
|
|
CG
|
C:HIS110
|
4.3
|
58.5
|
1.0
|
|
CB
|
C:PRO66
|
4.4
|
35.9
|
1.0
|
|
ND1
|
B:HIS-1
|
4.5
|
55.8
|
1.0
|
|
O
|
C:PRO66
|
4.8
|
28.8
|
1.0
|
|
Zinc binding site 3 out
of 13 in 9iyk
Go back to
Zinc Binding Sites List in 9iyk
Zinc binding site 3 out
of 13 in the Crystal Structure of HSOD1 in C121 Space Group
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 3 of Crystal Structure of HSOD1 in C121 Space Group within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Zn203
b:29.4
occ:1.00
|
OD1
|
C:ASP83
|
2.0
|
31.7
|
1.0
|
|
ND1
|
C:HIS71
|
2.0
|
35.8
|
1.0
|
|
ND1
|
C:HIS80
|
2.0
|
20.9
|
1.0
|
|
ND1
|
C:HIS63
|
2.2
|
35.1
|
1.0
|
|
OD2
|
C:ASP83
|
2.3
|
47.4
|
1.0
|
|
CG
|
C:ASP83
|
2.4
|
46.6
|
1.0
|
|
CE1
|
C:HIS71
|
2.9
|
31.8
|
1.0
|
|
CE1
|
C:HIS80
|
3.0
|
27.6
|
1.0
|
|
CG
|
C:HIS80
|
3.0
|
25.4
|
1.0
|
|
CG
|
C:HIS63
|
3.1
|
23.2
|
1.0
|
|
CE1
|
C:HIS63
|
3.1
|
30.4
|
1.0
|
|
CG
|
C:HIS71
|
3.1
|
25.3
|
1.0
|
|
CB
|
C:HIS63
|
3.4
|
20.9
|
1.0
|
|
CB
|
C:HIS80
|
3.4
|
32.5
|
1.0
|
|
CB
|
C:HIS71
|
3.5
|
26.1
|
1.0
|
|
O
|
C:LYS136
|
3.9
|
33.9
|
1.0
|
|
CB
|
C:ASP83
|
3.9
|
38.9
|
1.0
|
|
CA
|
C:HIS71
|
3.9
|
36.6
|
1.0
|
|
NE2
|
C:HIS71
|
4.1
|
42.4
|
1.0
|
|
NE2
|
C:HIS80
|
4.1
|
25.7
|
1.0
|
|
CD2
|
C:HIS80
|
4.1
|
21.7
|
1.0
|
|
NE2
|
C:HIS63
|
4.2
|
38.8
|
1.0
|
|
CD2
|
C:HIS63
|
4.2
|
30.9
|
1.0
|
|
CD2
|
C:HIS71
|
4.2
|
39.8
|
1.0
|
|
CA
|
C:ASP83
|
4.6
|
29.9
|
1.0
|
|
CA
|
C:HIS80
|
4.6
|
34.3
|
1.0
|
|
N
|
C:HIS80
|
4.6
|
39.8
|
1.0
|
|
N
|
C:GLY72
|
4.7
|
30.2
|
1.0
|
|
C
|
C:LYS136
|
4.9
|
34.4
|
1.0
|
|
C
|
C:HIS71
|
4.9
|
35.0
|
1.0
|
|
CA
|
C:HIS63
|
4.9
|
31.9
|
1.0
|
|
N
|
C:ASP83
|
4.9
|
32.7
|
1.0
|
|
CD2
|
C:HIS46
|
4.9
|
39.1
|
1.0
|
|
N
|
C:HIS71
|
4.9
|
26.4
|
1.0
|
|
Zinc binding site 4 out
of 13 in 9iyk
Go back to
Zinc Binding Sites List in 9iyk
Zinc binding site 4 out
of 13 in the Crystal Structure of HSOD1 in C121 Space Group
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 4 of Crystal Structure of HSOD1 in C121 Space Group within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
K:Zn202
b:44.7
occ:1.00
|
OD1
|
K:ASP83
|
2.0
|
59.5
|
1.0
|
|
ND1
|
K:HIS63
|
2.1
|
51.0
|
1.0
|
|
ND1
|
K:HIS80
|
2.1
|
44.0
|
1.0
|
|
OD2
|
K:ASP83
|
2.2
|
38.9
|
1.0
|
|
ND1
|
K:HIS71
|
2.2
|
53.7
|
1.0
|
|
CG
|
K:ASP83
|
2.4
|
51.6
|
1.0
|
|
CE1
|
K:HIS80
|
2.9
|
48.4
|
1.0
|
|
CG
|
K:HIS63
|
2.9
|
43.4
|
1.0
|
|
CE1
|
K:HIS63
|
3.1
|
50.1
|
1.0
|
|
CE1
|
K:HIS71
|
3.1
|
50.4
|
1.0
|
|
CB
|
K:HIS63
|
3.2
|
36.9
|
1.0
|
|
CG
|
K:HIS80
|
3.2
|
42.7
|
1.0
|
|
CG
|
K:HIS71
|
3.3
|
43.8
|
1.0
|
|
CB
|
K:HIS71
|
3.6
|
46.4
|
1.0
|
|
CB
|
K:HIS80
|
3.7
|
47.2
|
1.0
|
|
CB
|
K:ASP83
|
3.8
|
49.1
|
1.0
|
|
O
|
K:LYS136
|
4.0
|
52.6
|
1.0
|
|
CA
|
K:HIS71
|
4.0
|
46.8
|
1.0
|
|
NE2
|
K:HIS80
|
4.1
|
50.1
|
1.0
|
|
CD2
|
K:HIS63
|
4.1
|
44.5
|
1.0
|
|
NE2
|
K:HIS63
|
4.2
|
40.6
|
1.0
|
|
CD2
|
K:HIS80
|
4.3
|
51.4
|
1.0
|
|
NE2
|
K:HIS71
|
4.3
|
49.3
|
1.0
|
|
CD2
|
K:HIS71
|
4.4
|
44.3
|
1.0
|
|
CA
|
K:ASP83
|
4.4
|
48.7
|
1.0
|
|
CA
|
K:HIS63
|
4.7
|
42.4
|
1.0
|
|
N
|
K:HIS80
|
4.8
|
49.9
|
1.0
|
|
O
|
K:HOH314
|
4.8
|
48.3
|
1.0
|
|
N
|
K:ASP83
|
4.8
|
53.2
|
1.0
|
|
C
|
K:LYS136
|
4.9
|
47.7
|
1.0
|
|
N
|
K:GLY72
|
4.9
|
53.1
|
1.0
|
|
CA
|
K:HIS80
|
4.9
|
47.3
|
1.0
|
|
N
|
K:HIS71
|
5.0
|
50.0
|
1.0
|
|
Zinc binding site 5 out
of 13 in 9iyk
Go back to
Zinc Binding Sites List in 9iyk
Zinc binding site 5 out
of 13 in the Crystal Structure of HSOD1 in C121 Space Group
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 5 of Crystal Structure of HSOD1 in C121 Space Group within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Zn202
b:52.7
occ:1.00
|
OD1
|
F:ASP83
|
1.8
|
65.8
|
1.0
|
|
ND1
|
F:HIS63
|
1.9
|
61.4
|
1.0
|
|
ND1
|
F:HIS80
|
2.1
|
56.1
|
1.0
|
|
ND1
|
F:HIS71
|
2.1
|
57.7
|
1.0
|
|
CG
|
F:ASP83
|
2.8
|
61.1
|
1.0
|
|
CE1
|
F:HIS80
|
2.8
|
59.8
|
1.0
|
|
CE1
|
F:HIS71
|
2.9
|
62.7
|
1.0
|
|
CE1
|
F:HIS63
|
2.9
|
60.4
|
1.0
|
|
CG
|
F:HIS63
|
2.9
|
60.7
|
1.0
|
|
OD2
|
F:ASP83
|
3.2
|
63.8
|
1.0
|
|
CG
|
F:HIS71
|
3.2
|
59.9
|
1.0
|
|
CG
|
F:HIS80
|
3.3
|
67.6
|
1.0
|
|
CB
|
F:HIS63
|
3.3
|
61.8
|
1.0
|
|
CB
|
F:HIS71
|
3.7
|
62.5
|
1.0
|
|
O
|
F:LYS136
|
3.8
|
55.5
|
1.0
|
|
CB
|
F:HIS80
|
3.9
|
65.3
|
1.0
|
|
CB
|
F:ASP83
|
4.0
|
58.7
|
1.0
|
|
NE2
|
F:HIS80
|
4.0
|
65.0
|
1.0
|
|
NE2
|
F:HIS63
|
4.0
|
59.1
|
1.0
|
|
CD2
|
F:HIS63
|
4.0
|
59.2
|
1.0
|
|
NE2
|
F:HIS71
|
4.1
|
63.8
|
1.0
|
|
CA
|
F:HIS71
|
4.1
|
63.6
|
1.0
|
|
CD2
|
F:HIS71
|
4.2
|
59.7
|
1.0
|
|
CD2
|
F:HIS80
|
4.3
|
65.5
|
1.0
|
|
CA
|
F:ASP83
|
4.5
|
56.0
|
1.0
|
|
CD2
|
F:HIS46
|
4.7
|
64.2
|
1.0
|
|
N
|
F:ASP83
|
4.7
|
57.6
|
1.0
|
|
C
|
F:LYS136
|
4.8
|
61.3
|
1.0
|
|
CA
|
F:HIS63
|
4.8
|
61.0
|
1.0
|
|
N
|
F:GLY72
|
4.9
|
64.0
|
1.0
|
|
N
|
F:HIS80
|
5.0
|
64.8
|
1.0
|
|
Zinc binding site 6 out
of 13 in 9iyk
Go back to
Zinc Binding Sites List in 9iyk
Zinc binding site 6 out
of 13 in the Crystal Structure of HSOD1 in C121 Space Group
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 6 of Crystal Structure of HSOD1 in C121 Space Group within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Zn202
b:54.0
occ:1.00
|
OD1
|
E:ASP83
|
1.9
|
52.1
|
1.0
|
|
ND1
|
E:HIS80
|
2.0
|
47.4
|
1.0
|
|
ND1
|
E:HIS71
|
2.1
|
59.2
|
1.0
|
|
ND1
|
E:HIS63
|
2.1
|
43.3
|
1.0
|
|
CE1
|
E:HIS80
|
2.6
|
55.8
|
1.0
|
|
CG
|
E:ASP83
|
2.8
|
53.6
|
1.0
|
|
CE1
|
E:HIS71
|
2.9
|
53.4
|
1.0
|
|
CG
|
E:HIS63
|
3.0
|
43.6
|
1.0
|
|
CE1
|
E:HIS63
|
3.1
|
45.6
|
1.0
|
|
CG
|
E:HIS71
|
3.2
|
49.4
|
1.0
|
|
OD2
|
E:ASP83
|
3.2
|
56.8
|
1.0
|
|
CG
|
E:HIS80
|
3.2
|
58.9
|
1.0
|
|
CB
|
E:HIS63
|
3.3
|
45.1
|
1.0
|
|
CB
|
E:HIS71
|
3.6
|
49.7
|
1.0
|
|
CB
|
E:HIS80
|
3.8
|
52.1
|
1.0
|
|
NE2
|
E:HIS80
|
3.9
|
54.6
|
1.0
|
|
O
|
E:LYS136
|
4.0
|
51.4
|
1.0
|
|
NE2
|
E:HIS71
|
4.0
|
47.8
|
1.0
|
|
CB
|
E:ASP83
|
4.1
|
48.2
|
1.0
|
|
CD2
|
E:HIS80
|
4.2
|
48.1
|
1.0
|
|
CA
|
E:HIS71
|
4.2
|
47.9
|
1.0
|
|
CD2
|
E:HIS63
|
4.2
|
52.4
|
1.0
|
|
CD2
|
E:HIS71
|
4.2
|
53.9
|
1.0
|
|
NE2
|
E:HIS63
|
4.2
|
47.9
|
1.0
|
|
CA
|
E:ASP83
|
4.5
|
42.8
|
1.0
|
|
CD2
|
E:HIS46
|
4.8
|
44.8
|
1.0
|
|
CA
|
E:HIS63
|
4.8
|
46.5
|
1.0
|
|
N
|
E:HIS80
|
4.9
|
50.3
|
1.0
|
|
N
|
E:ASP83
|
4.9
|
40.3
|
1.0
|
|
N
|
E:GLY72
|
4.9
|
57.9
|
1.0
|
|
C
|
E:LYS136
|
4.9
|
53.4
|
1.0
|
|
CA
|
E:HIS80
|
5.0
|
53.0
|
1.0
|
|
Zinc binding site 7 out
of 13 in 9iyk
Go back to
Zinc Binding Sites List in 9iyk
Zinc binding site 7 out
of 13 in the Crystal Structure of HSOD1 in C121 Space Group
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 7 of Crystal Structure of HSOD1 in C121 Space Group within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Zn202
b:84.6
occ:1.00
|
OD1
|
D:ASP83
|
1.7
|
100.8
|
1.0
|
|
ND1
|
D:HIS63
|
2.1
|
90.5
|
1.0
|
|
ND1
|
D:HIS71
|
2.1
|
102.2
|
1.0
|
|
ND1
|
D:HIS80
|
2.2
|
92.2
|
1.0
|
|
CG
|
D:ASP83
|
2.6
|
95.9
|
1.0
|
|
OD2
|
D:ASP83
|
2.8
|
91.0
|
1.0
|
|
CE1
|
D:HIS80
|
2.9
|
93.3
|
1.0
|
|
CE1
|
D:HIS71
|
2.9
|
93.8
|
1.0
|
|
CG
|
D:HIS63
|
2.9
|
90.2
|
1.0
|
|
CB
|
D:HIS63
|
3.1
|
91.3
|
1.0
|
|
CE1
|
D:HIS63
|
3.2
|
90.0
|
1.0
|
|
CG
|
D:HIS71
|
3.3
|
92.0
|
1.0
|
|
CG
|
D:HIS80
|
3.4
|
95.2
|
1.0
|
|
CB
|
D:HIS71
|
3.8
|
93.3
|
1.0
|
|
CB
|
D:HIS80
|
3.9
|
95.6
|
1.0
|
|
CB
|
D:ASP83
|
4.0
|
89.0
|
1.0
|
|
O
|
D:LYS136
|
4.1
|
93.6
|
1.0
|
|
NE2
|
D:HIS71
|
4.1
|
97.0
|
1.0
|
|
NE2
|
D:HIS80
|
4.1
|
94.3
|
1.0
|
|
CD2
|
D:HIS63
|
4.1
|
89.8
|
1.0
|
|
CA
|
D:HIS71
|
4.2
|
93.6
|
1.0
|
|
NE2
|
D:HIS63
|
4.2
|
89.7
|
1.0
|
|
CD2
|
D:HIS71
|
4.3
|
94.0
|
1.0
|
|
CD2
|
D:HIS80
|
4.4
|
93.9
|
1.0
|
|
CD2
|
D:HIS46
|
4.4
|
87.5
|
1.0
|
|
CA
|
D:ASP83
|
4.5
|
88.0
|
1.0
|
|
CA
|
D:HIS63
|
4.7
|
93.8
|
1.0
|
|
N
|
D:HIS80
|
4.9
|
94.5
|
1.0
|
|
N
|
D:ASP83
|
4.9
|
96.0
|
1.0
|
|
N
|
D:GLY72
|
5.0
|
100.8
|
1.0
|
|
Zinc binding site 8 out
of 13 in 9iyk
Go back to
Zinc Binding Sites List in 9iyk
Zinc binding site 8 out
of 13 in the Crystal Structure of HSOD1 in C121 Space Group
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 8 of Crystal Structure of HSOD1 in C121 Space Group within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Zn202
b:49.1
occ:1.00
|
ND1
|
B:HIS80
|
1.9
|
51.2
|
1.0
|
|
OD1
|
B:ASP83
|
1.9
|
54.4
|
1.0
|
|
ND1
|
B:HIS71
|
2.0
|
62.4
|
1.0
|
|
OD2
|
B:ASP83
|
2.1
|
49.3
|
1.0
|
|
ND1
|
B:HIS63
|
2.2
|
49.5
|
1.0
|
|
CG
|
B:ASP83
|
2.3
|
53.9
|
1.0
|
|
CE1
|
B:HIS80
|
2.8
|
58.9
|
1.0
|
|
CG
|
B:HIS80
|
2.9
|
51.5
|
1.0
|
|
CE1
|
B:HIS71
|
3.0
|
62.0
|
1.0
|
|
CG
|
B:HIS71
|
3.1
|
53.7
|
1.0
|
|
CG
|
B:HIS63
|
3.1
|
56.7
|
1.0
|
|
CE1
|
B:HIS63
|
3.2
|
47.6
|
1.0
|
|
CB
|
B:HIS80
|
3.3
|
54.0
|
1.0
|
|
CB
|
B:HIS63
|
3.4
|
54.1
|
1.0
|
|
CB
|
B:HIS71
|
3.5
|
54.2
|
1.0
|
|
CA
|
B:HIS71
|
3.8
|
54.8
|
1.0
|
|
CB
|
B:ASP83
|
3.8
|
50.9
|
1.0
|
|
NE2
|
B:HIS80
|
3.8
|
65.8
|
1.0
|
|
CD2
|
B:HIS80
|
3.9
|
54.0
|
1.0
|
|
O
|
B:LYS136
|
4.0
|
54.1
|
1.0
|
|
NE2
|
B:HIS71
|
4.1
|
60.5
|
1.0
|
|
CD2
|
B:HIS71
|
4.2
|
58.7
|
1.0
|
|
CD2
|
B:HIS63
|
4.3
|
55.1
|
1.0
|
|
NE2
|
B:HIS63
|
4.3
|
53.8
|
1.0
|
|
N
|
B:HIS80
|
4.5
|
51.7
|
1.0
|
|
CA
|
B:HIS80
|
4.5
|
50.9
|
1.0
|
|
CA
|
B:ASP83
|
4.6
|
49.8
|
1.0
|
|
N
|
B:GLY72
|
4.6
|
62.6
|
1.0
|
|
C
|
B:HIS71
|
4.8
|
60.2
|
1.0
|
|
N
|
B:HIS71
|
4.8
|
60.9
|
1.0
|
|
CD2
|
B:HIS46
|
4.8
|
55.4
|
1.0
|
|
N
|
B:ASP83
|
4.9
|
51.0
|
1.0
|
|
CA
|
B:HIS63
|
4.9
|
58.8
|
1.0
|
|
Zinc binding site 9 out
of 13 in 9iyk
Go back to
Zinc Binding Sites List in 9iyk
Zinc binding site 9 out
of 13 in the Crystal Structure of HSOD1 in C121 Space Group
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 9 of Crystal Structure of HSOD1 in C121 Space Group within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Zn202
b:67.8
occ:1.00
|
ND1
|
G:HIS63
|
2.1
|
65.3
|
1.0
|
|
ND1
|
G:HIS80
|
2.1
|
77.9
|
1.0
|
|
ND1
|
G:HIS71
|
2.1
|
82.0
|
1.0
|
|
OD1
|
G:ASP83
|
2.1
|
64.8
|
1.0
|
|
OD2
|
G:ASP83
|
2.2
|
84.5
|
1.0
|
|
CG
|
G:ASP83
|
2.4
|
70.1
|
1.0
|
|
CE1
|
G:HIS71
|
2.8
|
65.9
|
1.0
|
|
CE1
|
G:HIS80
|
2.9
|
75.3
|
1.0
|
|
CG
|
G:HIS63
|
3.0
|
63.3
|
1.0
|
|
CE1
|
G:HIS63
|
3.1
|
60.6
|
1.0
|
|
CG
|
G:HIS71
|
3.2
|
70.3
|
1.0
|
|
CG
|
G:HIS80
|
3.2
|
76.3
|
1.0
|
|
CB
|
G:HIS63
|
3.3
|
65.0
|
1.0
|
|
CB
|
G:HIS80
|
3.7
|
72.8
|
1.0
|
|
CB
|
G:HIS71
|
3.8
|
74.6
|
1.0
|
|
CB
|
G:ASP83
|
3.9
|
63.9
|
1.0
|
|
O
|
G:LYS136
|
3.9
|
77.3
|
1.0
|
|
NE2
|
G:HIS71
|
4.0
|
63.0
|
1.0
|
|
NE2
|
G:HIS80
|
4.1
|
78.3
|
1.0
|
|
NE2
|
G:HIS63
|
4.2
|
61.5
|
1.0
|
|
CD2
|
G:HIS63
|
4.2
|
60.6
|
1.0
|
|
CD2
|
G:HIS71
|
4.2
|
68.8
|
1.0
|
|
CD2
|
G:HIS80
|
4.3
|
78.5
|
1.0
|
|
CA
|
G:HIS71
|
4.3
|
83.7
|
1.0
|
|
CA
|
G:ASP83
|
4.5
|
61.2
|
1.0
|
|
N
|
G:HIS80
|
4.8
|
87.0
|
1.0
|
|
C
|
G:LYS136
|
4.8
|
81.6
|
1.0
|
|
CD2
|
G:HIS46
|
4.8
|
57.9
|
1.0
|
|
CA
|
G:HIS63
|
4.8
|
67.0
|
1.0
|
|
N
|
G:GLY72
|
4.9
|
77.9
|
1.0
|
|
CA
|
G:HIS80
|
4.9
|
75.8
|
1.0
|
|
O
|
G:GLY72
|
4.9
|
73.3
|
1.0
|
|
Zinc binding site 10 out
of 13 in 9iyk
Go back to
Zinc Binding Sites List in 9iyk
Zinc binding site 10 out
of 13 in the Crystal Structure of HSOD1 in C121 Space Group
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 10 of Crystal Structure of HSOD1 in C121 Space Group within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Zn202
b:59.8
occ:1.00
|
ND1
|
I:HIS80
|
1.9
|
66.8
|
1.0
|
|
OD1
|
I:ASP83
|
2.0
|
70.1
|
1.0
|
|
ND1
|
I:HIS63
|
2.1
|
67.2
|
1.0
|
|
OD2
|
I:ASP83
|
2.2
|
72.1
|
1.0
|
|
ND1
|
I:HIS71
|
2.2
|
80.8
|
1.0
|
|
CG
|
I:ASP83
|
2.3
|
67.8
|
1.0
|
|
CG
|
I:HIS80
|
2.9
|
74.6
|
1.0
|
|
CE1
|
I:HIS80
|
2.9
|
67.3
|
1.0
|
|
CE1
|
I:HIS71
|
3.1
|
69.6
|
1.0
|
|
CG
|
I:HIS63
|
3.1
|
68.0
|
1.0
|
|
CE1
|
I:HIS63
|
3.2
|
68.0
|
1.0
|
|
CB
|
I:HIS80
|
3.2
|
72.8
|
1.0
|
|
CG
|
I:HIS71
|
3.2
|
70.6
|
1.0
|
|
CB
|
I:HIS63
|
3.4
|
68.6
|
1.0
|
|
CB
|
I:HIS71
|
3.6
|
70.9
|
1.0
|
|
CB
|
I:ASP83
|
3.9
|
71.1
|
1.0
|
|
CA
|
I:HIS71
|
3.9
|
70.4
|
1.0
|
|
CD2
|
I:HIS80
|
4.0
|
78.4
|
1.0
|
|
NE2
|
I:HIS80
|
4.0
|
72.5
|
1.0
|
|
O
|
I:LYS136
|
4.0
|
66.0
|
1.0
|
|
NE2
|
I:HIS71
|
4.2
|
71.3
|
1.0
|
|
CD2
|
I:HIS63
|
4.3
|
66.9
|
1.0
|
|
NE2
|
I:HIS63
|
4.3
|
67.8
|
1.0
|
|
CD2
|
I:HIS71
|
4.3
|
71.9
|
1.0
|
|
CA
|
I:HIS80
|
4.5
|
74.3
|
1.0
|
|
CA
|
I:ASP83
|
4.5
|
76.7
|
1.0
|
|
N
|
I:HIS80
|
4.6
|
84.0
|
1.0
|
|
N
|
I:GLY72
|
4.7
|
74.2
|
1.0
|
|
N
|
I:ASP83
|
4.8
|
67.5
|
1.0
|
|
CA
|
I:HIS63
|
4.9
|
70.6
|
1.0
|
|
C
|
I:HIS71
|
4.9
|
79.4
|
1.0
|
|
N
|
I:HIS71
|
4.9
|
71.1
|
1.0
|
|
CD2
|
I:HIS46
|
4.9
|
67.3
|
1.0
|
|
Reference:
I.Yapici,
H.Demirci.
The New Crystal Form of HSOD1 To Be Published.
Page generated: Thu Oct 31 15:41:37 2024
|
