Zinc in PDB 9gaw: High-Resolution Structure of the Anaphase-Promoting Complex/Cyclosome (Apc/C) Bound to Co-Activator CDH1

Zinc Binding Sites:

The binding sites of Zinc atom in the High-Resolution Structure of the Anaphase-Promoting Complex/Cyclosome (Apc/C) Bound to Co-Activator CDH1 (pdb code 9gaw). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 6 binding sites of Zinc where determined in the High-Resolution Structure of the Anaphase-Promoting Complex/Cyclosome (Apc/C) Bound to Co-Activator CDH1, PDB code: 9gaw:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6;

Zinc binding site 1 out of 6 in 9gaw

Go back to Zinc Binding Sites List in 9gaw
Zinc binding site 1 out of 6 in the High-Resolution Structure of the Anaphase-Promoting Complex/Cyclosome (Apc/C) Bound to Co-Activator CDH1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of High-Resolution Structure of the Anaphase-Promoting Complex/Cyclosome (Apc/C) Bound to Co-Activator CDH1 within 5.0Å range:
probe atom residue distance (Å) B Occ
N:Zn901

b:105.0
occ:1.00
 SG N:CYS224 2.1 30.0 1.0
SG N:CYS221 2.3 64.2 1.0
SG N:CYS231 2.3 60.4 1.0
SG N:CYS233 2.3 70.2 1.0
N N:CYS224 3.1 69.5 1.0
CB N:CYS224 3.1 30.0 1.0
CB N:CYS231 3.4 65.5 1.0
CB N:CYS233 3.4 74.1 1.0
CB N:CYS221 3.4 67.4 1.0
CA N:CYS224 3.7 68.6 1.0
NE2 N:GLN186 4.0 30.0 1.0
N N:CYS233 4.0 76.0 1.0
CA N:CYS231 4.1 68.0 1.0
C N:GLY223 4.2 71.3 1.0
O N:CYS224 4.2 64.2 1.0
CA N:CYS233 4.3 76.1 1.0
CA N:GLY223 4.4 68.9 1.0
N N:GLY223 4.5 69.2 1.0
C N:CYS224 4.5 69.2 1.0
N N:TRP232 4.5 70.7 1.0
C N:CYS231 4.6 69.1 1.0
CA N:CYS221 4.8 68.9 1.0

Zinc binding site 2 out of 6 in 9gaw

Go back to Zinc Binding Sites List in 9gaw
Zinc binding site 2 out of 6 in the High-Resolution Structure of the Anaphase-Promoting Complex/Cyclosome (Apc/C) Bound to Co-Activator CDH1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of High-Resolution Structure of the Anaphase-Promoting Complex/Cyclosome (Apc/C) Bound to Co-Activator CDH1 within 5.0Å range:
probe atom residue distance (Å) B Occ
S:Zn501

b:186.3
occ:1.00
 SG S:CYS381 2.3 89.4 1.0
SG S:CYS401 2.3 92.7 1.0
SG S:CYS378 2.3 93.1 1.0
SG S:CYS396 2.3 93.6 1.0
CB S:CYS378 3.0 93.6 1.0
CB S:CYS401 3.1 94.2 1.0
CB S:CYS396 3.4 94.4 1.0
CB S:CYS381 4.0 90.7 1.0
N S:CYS381 4.2 92.5 1.0
CB S:SER383 4.5 91.0 1.0
CA S:CYS401 4.5 95.5 1.0
CB S:PHE403 4.5 91.7 1.0
CA S:CYS378 4.5 94.0 1.0
CB S:ARG380 4.5 90.9 1.0
CA S:CYS381 4.6 92.2 1.0
CG S:ARG380 4.7 87.0 1.0
CA S:CYS396 4.8 94.8 1.0
CB S:ARG398 4.8 91.8 1.0
N S:PHE403 4.9 93.6 1.0
OG S:SER383 4.9 82.3 1.0
C S:CYS401 4.9 95.2 1.0
N S:GLY402 5.0 94.2 1.0

Zinc binding site 3 out of 6 in 9gaw

Go back to Zinc Binding Sites List in 9gaw
Zinc binding site 3 out of 6 in the High-Resolution Structure of the Anaphase-Promoting Complex/Cyclosome (Apc/C) Bound to Co-Activator CDH1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of High-Resolution Structure of the Anaphase-Promoting Complex/Cyclosome (Apc/C) Bound to Co-Activator CDH1 within 5.0Å range:
probe atom residue distance (Å) B Occ
S:Zn502

b:208.6
occ:1.00
 NE2 S:HIS414 2.3 59.5 1.0
SG S:CYS406 2.3 87.7 1.0
SG S:CYS409 2.4 30.0 1.0
CD2 S:HIS414 3.0 59.4 1.0
CB S:CYS409 3.2 30.0 1.0
N S:CYS409 3.2 90.4 1.0
CB S:CYS406 3.2 90.3 1.0
CE1 S:HIS414 3.4 58.9 1.0
O S:CYS406 3.5 89.8 1.0
CA S:CYS409 3.7 89.3 1.0
SG S:CYS411 3.7 30.0 1.0
CB S:LYS408 3.7 30.0 1.0
C S:LYS408 3.9 89.1 1.0
CA S:LYS408 4.2 89.3 1.0
CG S:HIS414 4.2 65.5 1.0
C S:CYS406 4.2 91.2 1.0
CA S:CYS406 4.3 91.8 1.0
ND1 S:HIS414 4.4 59.1 1.0
N S:LYS408 4.4 90.2 1.0
C S:CYS409 4.4 89.4 1.0
O S:LYS408 4.8 86.4 1.0
N S:LEU410 4.8 90.5 1.0

Zinc binding site 4 out of 6 in 9gaw

Go back to Zinc Binding Sites List in 9gaw
Zinc binding site 4 out of 6 in the High-Resolution Structure of the Anaphase-Promoting Complex/Cyclosome (Apc/C) Bound to Co-Activator CDH1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of High-Resolution Structure of the Anaphase-Promoting Complex/Cyclosome (Apc/C) Bound to Co-Activator CDH1 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn101

b:191.4
occ:1.00
 ND1 C:HIS56 2.1 82.1 1.0
SG C:CYS26 2.3 81.4 1.0
SG C:CYS59 2.3 83.1 1.0
SG C:CYS23 2.3 84.1 1.0
CB C:CYS23 2.7 86.0 1.0
CG C:HIS56 2.9 88.0 1.0
CB C:HIS56 3.0 88.4 1.0
CE1 C:HIS56 3.2 82.7 1.0
CB C:CYS26 3.3 84.2 1.0
CB C:CYS59 3.3 87.2 1.0
N C:HIS56 3.9 88.7 1.0
N C:CYS26 4.0 87.1 1.0
CA C:HIS56 4.0 88.9 1.0
CD2 C:HIS56 4.1 81.9 1.0
NE2 C:HIS56 4.2 83.4 1.0
CA C:CYS26 4.2 86.5 1.0
CA C:CYS23 4.2 86.8 1.0
CA C:CYS59 4.8 88.5 1.0
CB C:CYS34 4.8 84.4 1.0
C C:CYS23 4.9 86.6 1.0
C C:HIS56 4.9 89.0 1.0
O C:HIS56 5.0 87.6 1.0
CD C:PRO35 5.0 85.1 1.0
C C:CYS26 5.0 86.3 1.0
CB C:ILE25 5.0 84.8 1.0

Zinc binding site 5 out of 6 in 9gaw

Go back to Zinc Binding Sites List in 9gaw
Zinc binding site 5 out of 6 in the High-Resolution Structure of the Anaphase-Promoting Complex/Cyclosome (Apc/C) Bound to Co-Activator CDH1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of High-Resolution Structure of the Anaphase-Promoting Complex/Cyclosome (Apc/C) Bound to Co-Activator CDH1 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn102

b:212.3
occ:1.00
 SG C:CYS44 2.2 82.9 1.0
ND1 C:HIS58 2.3 78.9 1.0
SG C:CYS37 2.3 77.9 1.0
SG C:CYS34 2.4 80.4 1.0
CE1 C:HIS58 2.7 80.4 1.0
CB C:CYS44 3.0 85.1 1.0
CB C:CYS37 3.1 81.5 1.0
CB C:CYS34 3.3 84.4 1.0
CG C:HIS58 3.5 87.4 1.0
CA C:CYS44 3.7 86.3 1.0
NE2 C:HIS58 3.9 81.6 1.0
N C:CYS34 4.0 86.0 1.0
CA C:CYS34 4.2 86.0 1.0
CB C:HIS58 4.2 88.3 1.0
CD2 C:HIS58 4.3 79.7 1.0
CA C:CYS37 4.3 83.3 1.0
N C:CYS37 4.3 84.5 1.0
O C:ASP43 4.5 81.8 1.0
N C:CYS44 4.7 85.8 1.0
O C:CYS34 4.8 84.5 1.0
C C:CYS34 4.8 86.4 1.0
C C:CYS44 4.8 86.6 1.0

Zinc binding site 6 out of 6 in 9gaw

Go back to Zinc Binding Sites List in 9gaw
Zinc binding site 6 out of 6 in the High-Resolution Structure of the Anaphase-Promoting Complex/Cyclosome (Apc/C) Bound to Co-Activator CDH1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of High-Resolution Structure of the Anaphase-Promoting Complex/Cyclosome (Apc/C) Bound to Co-Activator CDH1 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn103

b:205.4
occ:1.00
 SG C:CYS73 2.3 82.2 1.0
SG C:CYS76 2.3 78.8 1.0
ND1 C:HIS53 2.3 77.9 1.0
SG C:CYS51 2.4 78.2 1.0
CE1 C:HIS53 2.9 79.0 1.0
CG C:HIS53 3.0 86.1 1.0
CB C:CYS73 3.0 85.6 1.0
CB C:HIS53 3.6 86.4 1.0
N C:CYS76 3.6 86.2 1.0
CB C:CYS51 3.6 83.4 1.0
NE2 C:HIS53 3.7 79.9 1.0
NE2 C:GLN78 3.7 66.0 1.0
CB C:CYS76 3.8 82.8 1.0
CD2 C:HIS53 3.8 78.5 1.0
CB C:MET75 3.9 30.0 1.0
CG C:GLN78 3.9 78.3 1.0
CA C:CYS76 4.2 85.4 1.0
CD C:GLN78 4.4 75.3 1.0
CA C:CYS73 4.5 86.8 1.0
C C:MET75 4.5 85.3 1.0
CA C:MET75 4.6 85.2 1.0
N C:MET75 4.6 85.8 1.0
O C:CYS51 4.6 80.9 1.0
C C:CYS76 4.7 85.3 1.0
C C:CYS73 4.9 87.0 1.0
N C:ARG77 4.9 84.6 1.0
CA C:CYS51 4.9 85.6 1.0
CA C:HIS53 5.0 86.8 1.0

Reference:

A.Hoefler, J.Yu, L.Chang, Z.Zhang, J.Yang, A.Boland, D.Barford. High-Resolution Structure of the Anaphase-Promoting Complex (Apc/C) Bound to Co-Activator CDH1 To Be Published.
Page generated: Thu Oct 31 15:38:43 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy