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Zinc in PDB, part 494 (files: 19721-19760), PDB 8dtn-8e6z

Experimental structures of coordination spheres of Zinc (Zn) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Zinc atoms. PDB files: 19721-19760 (PDB 8dtn-8e6z).
  1. 8dtn (Zn: 4) - The Complex of Nanobody 6101 with BCL11A ZF6
    Other atoms: Mg (4);
  2. 8dtu (Zn: 1) - The Complex of Nanobody 5344N74D with BCL11A ZF6.
  3. 8dvr (Zn: 1) - Cryo-Em Structure of Rig-I Bound to the End of P3SLR30 (+Amppnp)
  4. 8dvs (Zn: 1) - Cryo-Em Structure of Rig-I Bound to the End of OHSLR30 (+Atp)
    Other atoms: Mg (1);
  5. 8dvu (Zn: 1) - Cryo-Em Structure of Rig-I Bound to the Internal Sites of OHSLR30 (+Atp)
    Other atoms: Mg (1);
  6. 8dw6 (Zn: 1) - T4 Bacteriophage Primosome with Single-Strand Dna, State 3
    Other atoms: Mg (5);
  7. 8dwj (Zn: 1) - Primase of Mutant Bacteriophage T4 Primosome with Single Strand Dna/Rna Primer Hybrid in Primer Exiting State
  8. 8dwl (Zn: 4) - Inhibitor-3:PP1 Coexpressed Complex
  9. 8dy7 (Zn: 3) - Streptomyces Venezuelae Rnap Transcription Open Promoter Complex with Whia and Whib Transcription Factors
    Other atoms: Mg (1); Fe (4);
  10. 8dy9 (Zn: 3) - Streptomyces Venezuelae Rnap Unconstrained Open Promoter Complex with Whia and Whib Transcription Factors
    Other atoms: Mg (1); Fe (4);
  11. 8dyq (Zn: 4) - Crystal Structure of Neisseria Gonorrhoeae Carbonic Anhydrase with Acetazolamide
  12. 8dze (Zn: 6) - Cryo-Em Structure of Bundle-Forming Pilus Extension Atpase From E. Coli in the Presence of Amp-Pnp (Class-1)
  13. 8dzf (Zn: 6) - Cryo-Em Structure of Bundle-Forming Pilus Extension Atpase From E.Coli in the Presence of Amp-Pnp (Class-2)
  14. 8dzg (Zn: 6) - Cryo-Em Structure of Bundle-Forming Pilus Extension Atpase From E.Coli in the Presence of Adp
    Other atoms: Mg (6);
  15. 8dzj (Zn: 1) - Cryo-Em Structure of Acidibacillus Sulfuroxidans CAS12F in Complex with Sgrna and Target Dna
  16. 8dzk (Zn: 5) - DBR1 in Complex with 5-Mer Cleavage Product
    Other atoms: Fe (5);
  17. 8e0f (Zn: 2) - Human Adenosine Deaminase Acting on Dsrna (ADAR2-Rd) Bound to Dsrna Containing A G-G Pair Adjacent to the Target Site
  18. 8e0q (Zn: 6) - Structure of the Human UBR5 Hect-Type E3 Ubiquitin Ligase in A C2 Symmetric Dimeric Form
  19. 8e14 (Zn: 2) - Cryo-Em Structure of Rous Sarcoma Virus Strand Transfer Complex
  20. 8e1d (Zn: 60) - uc(Nmr)-Derived Ensemble of the TAZ2 Domain of P300 Bound to the Microphthalmia-Associated Transcription Factor
  21. 8e2p (Zn: 4) - Crystal Structure of Tada*8.20 in A Complex with Ssdna
  22. 8e2q (Zn: 4) - Crystal Structure of Tadac-1.17 in A Complex with Ssdna
  23. 8e2r (Zn: 2) - Crystal Structure of Tadac-1.14
  24. 8e2s (Zn: 8) - Crystal Structure of Tadac-1.19
  25. 8e3d (Zn: 12) - ZBTB7A Zinc Finger Domain Bound to Dna Duplex Containing Cast Sequence (#11)
  26. 8e3e (Zn: 12) - ZBTB7A Zinc Finger Domain Bound to Dna Duplex Containing Cast Sequence (#10)
  27. 8e3f (Zn: 2) - Escherichia Coli Rho-Dependent Transcription Pre-Termination Complex Containing 18 Nt Long Rna Spacer, Mg-Adp-BEF3, and Nusg; Tec Part
    Other atoms: Mg (1);
  28. 8e3i (Zn: 3) - Cryo-Em Structure of the Human Mpsf in Complex with the Auuaaa Poly(A) Signal
  29. 8e3q (Zn: 1) - Cryo-Em Structure of the Human Mpsf
  30. 8e3s (Zn: 1) - Cryoem Structure of Yeast Arginyltransferase 1 (ATE1)
  31. 8e40 (Zn: 2) - Full-Length APOBEC3G in Complex with Hiv-1 Vif, Cbf-Beta, and Fork Rna
  32. 8e4a (Zn: 1) - Pseudomonas Lpxc in Complex with Lpc-233
    Other atoms: F (2);
  33. 8e4x (Zn: 2) - Human Adenosine Deaminase Acting on Dsrna (ADAR2-R2D) Bound to Dsrna Containing A G:3-Deaza Da Pair Adjacent to the Target Site
  34. 8e5d (Zn: 1) - Crystal Structure of Double-Stranded Dna Deaminase Toxin Ddda in Complex with Dna with the Target Cytosine Parked in the Major Groove
    Other atoms: Mg (1);
  35. 8e5e (Zn: 1) - Crystal Structure of Double-Stranded Dna Deaminase Toxin Ddda in Complex with Dna with the Target Cytosine Flipped Into the Active Site
    Other atoms: Mg (1);
  36. 8e5k (Zn: 2) - Escherichia Coli Rho-Dependent Transcription Pre-Termination Complex Containing 21 Nt Long Rna Spacer, Mg-Adp-BEF3, and Nusg; Tec Part
    Other atoms: Mg (1);
  37. 8e5o (Zn: 2) - Escherichia Coli Rho-Dependent Transcription Pre-Termination Complex Containing 24 Nt Long Rna Spacer, Mg-Adp-BEF3, and Nusg; Tec Part
    Other atoms: Mg (1);
  38. 8e5t (Zn: 1) - Yeast Co-Transcriptional NOC1-NOC2 Rnp Assembly Checkpoint Intermediate
    Other atoms: Mg (33);
  39. 8e6x (Zn: 2) - Escherichia Coli Rho-Dependent Transcription Pre-Termination Complex Containing 18 Nt Long Rna Spacer, Lambda-TR1 Rut Rna, Mg-Adp-BEF3, and Nusg; Tec Part
    Other atoms: Mg (1);
  40. 8e6z (Zn: 2) - Escherichia Coli Rho-Dependent Transcription Pre-Termination Complex Containing 18 Nt Long Rna Spacer, DC75 Rut Mimic Rna, Mg-Adp-BEF3, and Nusg; Tec Part
    Other atoms: Mg (1);
Page generated: Thu Dec 28 12:57:24 2023

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