Atomistry » Zinc » PDB 7zzp-8ab0 » 8a5e
Atomistry »
  Zinc »
    PDB 7zzp-8ab0 »
      8a5e »

Zinc in PDB 8a5e: Cryo-Em Structure of the Electron Bifurcating Fe-Fe Hydrogenase Hydabc Complex From Acetobacterium Woodii in the Reduced State

Enzymatic activity of Cryo-Em Structure of the Electron Bifurcating Fe-Fe Hydrogenase Hydabc Complex From Acetobacterium Woodii in the Reduced State

All present enzymatic activity of Cryo-Em Structure of the Electron Bifurcating Fe-Fe Hydrogenase Hydabc Complex From Acetobacterium Woodii in the Reduced State:
1.12.7.2;

Other elements in 8a5e:

The structure of Cryo-Em Structure of the Electron Bifurcating Fe-Fe Hydrogenase Hydabc Complex From Acetobacterium Woodii in the Reduced State also contains other interesting chemical elements:

Iron (Fe) 54 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Cryo-Em Structure of the Electron Bifurcating Fe-Fe Hydrogenase Hydabc Complex From Acetobacterium Woodii in the Reduced State (pdb code 8a5e). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Cryo-Em Structure of the Electron Bifurcating Fe-Fe Hydrogenase Hydabc Complex From Acetobacterium Woodii in the Reduced State, PDB code: 8a5e:

Zinc binding site 1 out of 1 in 8a5e

Go back to Zinc Binding Sites List in 8a5e
Zinc binding site 1 out of 1 in the Cryo-Em Structure of the Electron Bifurcating Fe-Fe Hydrogenase Hydabc Complex From Acetobacterium Woodii in the Reduced State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of the Electron Bifurcating Fe-Fe Hydrogenase Hydabc Complex From Acetobacterium Woodii in the Reduced State within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn601

b:46.4
occ:1.00
NE2 B:HIS527 2.1 29.6 1.0
SG B:CYS533 2.3 40.3 1.0
SG B:CYS440 2.3 49.2 1.0
SG B:CYS538 2.3 48.5 1.0
CE1 B:HIS527 2.8 29.6 1.0
CB B:CYS533 3.2 40.3 1.0
CD2 B:HIS527 3.3 29.6 1.0
CB B:CYS538 3.5 48.5 1.0
CB B:CYS440 3.6 49.2 1.0
CA B:CYS533 3.8 40.3 1.0
N B:CYS538 3.9 48.5 1.0
ND1 B:HIS527 4.1 29.6 1.0
CG B:HIS527 4.3 29.6 1.0
CA B:CYS538 4.3 48.5 1.0
C B:CYS533 4.6 40.3 1.0
CD B:PRO534 4.7 38.9 1.0
N B:VAL537 4.8 45.6 1.0
CD1 B:LEU541 4.9 42.1 1.0
CA B:CYS440 4.9 49.2 1.0
N B:CYS533 4.9 40.3 1.0
C B:VAL537 4.9 45.6 1.0
CB B:VAL537 4.9 45.6 1.0
N B:PRO534 4.9 38.9 1.0

Reference:

A.Katsyv, A.Kumar, P.Saura, M.C.Poeverlein, S.A.Freibert, S.Stripp, S.Jain, A.P.Gamiz-Hernandez, V.R.I.Kaila, V.Mueller, J.M.Schuller. Molecular Basis of the Electron Bifurcation Mechanism in the [Fefe]- Hydrogenase Complex Hydabc J.Am.Chem.Soc. 2023.
ISSN: ESSN 1520-5126
DOI: 10.1021/JACS.2C11683
Page generated: Wed Oct 30 17:35:33 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy