Zinc in PDB 8a57: Cryo-Em Structure of Hflxr Bound to the Listeria Monocytogenes 50S Ribosomal Subunit.

Other elements in 8a57:

The structure of Cryo-Em Structure of Hflxr Bound to the Listeria Monocytogenes 50S Ribosomal Subunit. also contains other interesting chemical elements:

Magnesium (Mg) 160 atoms
Potassium (K) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Cryo-Em Structure of Hflxr Bound to the Listeria Monocytogenes 50S Ribosomal Subunit. (pdb code 8a57). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Cryo-Em Structure of Hflxr Bound to the Listeria Monocytogenes 50S Ribosomal Subunit., PDB code: 8a57:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 8a57

Go back to Zinc Binding Sites List in 8a57
Zinc binding site 1 out of 2 in the Cryo-Em Structure of Hflxr Bound to the Listeria Monocytogenes 50S Ribosomal Subunit.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Hflxr Bound to the Listeria Monocytogenes 50S Ribosomal Subunit. within 5.0Å range:
probe atom residue distance (Å) B Occ
5:Zn101

b:132.9
occ:1.00
ND2 5:ASN32 2.1 151.5 1.0
SG 5:CYS30 2.3 104.6 1.0
SG 5:CYS33 2.3 143.2 1.0
SG 5:CYS46 2.3 150.3 1.0
SG 5:CYS43 2.3 134.8 1.0
CG 5:ASN32 3.0 162.9 1.0
O 5:ASP50 3.2 216.5 1.0
CB 5:CYS46 3.3 165.4 1.0
OD1 5:ASN32 3.4 166.0 1.0
CB 5:CYS33 3.4 141.1 1.0
CB 5:CYS43 3.4 138.2 1.0
CB 5:CYS30 3.4 107.0 1.0
N 5:CYS33 3.5 148.5 1.0
C 5:ASP50 3.8 221.9 1.0
CA 5:ASP50 3.9 211.3 1.0
CA 5:CYS33 4.0 142.2 1.0
CB 5:ASN32 4.2 160.7 1.0
N 5:ASP50 4.5 218.0 1.0
CA 5:CYS46 4.5 182.9 1.0
N 5:CYS46 4.5 192.9 1.0
C 5:ASN32 4.6 154.1 1.0
NE2 5:GLN48 4.7 190.2 1.0
N 5:ASN32 4.7 156.0 1.0
CA 5:ASN32 4.7 156.5 1.0
CA 5:CYS43 4.8 138.2 1.0
CA 5:CYS30 4.8 112.0 1.0
CG 5:GLN48 4.9 196.3 1.0
CD 5:ARG37 4.9 62.9 1.0
N 5:GLY51 4.9 239.7 1.0
O 5:CYS43 5.0 163.7 1.0

Zinc binding site 2 out of 2 in 8a57

Go back to Zinc Binding Sites List in 8a57
Zinc binding site 2 out of 2 in the Cryo-Em Structure of Hflxr Bound to the Listeria Monocytogenes 50S Ribosomal Subunit.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of Hflxr Bound to the Listeria Monocytogenes 50S Ribosomal Subunit. within 5.0Å range:
probe atom residue distance (Å) B Occ
9:Zn101

b:54.2
occ:1.00
ND1 9:HIS32 2.0 50.5 1.0
SG 9:CYS14 2.3 62.6 1.0
SG 9:CYS27 2.3 56.4 1.0
SG 9:CYS11 2.3 66.4 1.0
CE1 9:HIS32 3.0 50.7 1.0
CG 9:HIS32 3.0 47.1 1.0
CB 9:CYS27 3.3 53.3 1.0
CB 9:HIS32 3.4 44.1 1.0
CB 9:CYS11 3.5 69.8 1.0
N 9:CYS11 3.5 65.0 1.0
CB 9:CYS14 3.6 65.9 1.0
N 9:CYS14 3.6 70.8 1.0
CA 9:CYS14 3.8 65.2 1.0
CA 9:CYS11 3.9 71.3 1.0
NE2 9:HIS32 4.1 50.1 1.0
CD2 9:HIS32 4.2 48.4 1.0
C 9:CYS11 4.4 75.4 1.0
C 9:LYS13 4.4 80.1 1.0
C 9:MET10 4.5 61.7 1.0
O 9:CYS11 4.6 77.5 1.0
CB 9:ASN29 4.7 55.1 1.0
CA 9:CYS27 4.7 54.8 1.0
CB 9:MET10 4.7 62.2 1.0
N 9:MET10 4.7 53.8 1.0
CB 9:LYS13 4.8 93.3 1.0
N 9:LYS13 4.8 84.3 1.0
CA 9:HIS32 4.9 43.0 1.0
CA 9:LYS13 4.9 85.5 1.0
CA 9:MET10 4.9 58.2 1.0
O 9:ASN29 5.0 47.1 1.0

Reference:

T.O.Koller, K.J.Turnbull, K.Vaitkevicius, C.Crowe-Mcauliffe, M.Roghanian, O.Bulvas, J.A.Nakamoto, T.Kurata, C.Julius, G.C.Atkinson, J.Johansson, V.Hauryliuk, D.N.Wilson. Structural Basis For Hflxr-Mediated Antibiotic Resistance in Listeria Monocytogenes. Nucleic Acids Res. V. 50 11285 2022.
ISSN: ESSN 1362-4962
PubMed: 36300626
DOI: 10.1093/NAR/GKAC934
Page generated: Sat Apr 8 07:29:05 2023

Last articles

Cl in 4NHT
Cl in 4NO7
Cl in 4NML
Cl in 4NN3
Cl in 4NMW
Cl in 4NM7
Cl in 4NM5
Cl in 4NM3
Cl in 4NM0
Cl in 4NHQ
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy