Zinc in PDB 8a57: Cryo-Em Structure of Hflxr Bound to the Listeria Monocytogenes 50S Ribosomal Subunit.

The structure of Cryo-Em Structure of Hflxr Bound to the Listeria Monocytogenes 50S Ribosomal Subunit. also contains other interesting chemical elements:

Magnesium	(Mg)	160 atoms
Potassium	(K)	1 atom

The binding sites of Zinc atom in the Cryo-Em Structure of Hflxr Bound to the Listeria Monocytogenes 50S Ribosomal Subunit. (pdb code 8a57). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Cryo-Em Structure of Hflxr Bound to the Listeria Monocytogenes 50S Ribosomal Subunit., PDB code: 8a57:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Cryo-Em Structure of Hflxr Bound to the Listeria Monocytogenes 50S Ribosomal Subunit.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Hflxr Bound to the Listeria Monocytogenes 50S Ribosomal Subunit. within 5.0Å range: probe atom residue distance (Å) B Occ 5:Zn101 b:132.9 occ:1.00 ND2 5:ASN32 2.1 151.5 1.0 SG 5:CYS30 2.3 104.6 1.0 SG 5:CYS33 2.3 143.2 1.0 SG 5:CYS46 2.3 150.3 1.0 SG 5:CYS43 2.3 134.8 1.0 CG 5:ASN32 3.0 162.9 1.0 O 5:ASP50 3.2 216.5 1.0 CB 5:CYS46 3.3 165.4 1.0 OD1 5:ASN32 3.4 166.0 1.0 CB 5:CYS33 3.4 141.1 1.0 CB 5:CYS43 3.4 138.2 1.0 CB 5:CYS30 3.4 107.0 1.0 N 5:CYS33 3.5 148.5 1.0 C 5:ASP50 3.8 221.9 1.0 CA 5:ASP50 3.9 211.3 1.0 CA 5:CYS33 4.0 142.2 1.0 CB 5:ASN32 4.2 160.7 1.0 N 5:ASP50 4.5 218.0 1.0 CA 5:CYS46 4.5 182.9 1.0 N 5:CYS46 4.5 192.9 1.0 C 5:ASN32 4.6 154.1 1.0 NE2 5:GLN48 4.7 190.2 1.0 N 5:ASN32 4.7 156.0 1.0 CA 5:ASN32 4.7 156.5 1.0 CA 5:CYS43 4.8 138.2 1.0 CA 5:CYS30 4.8 112.0 1.0 CG 5:GLN48 4.9 196.3 1.0 CD 5:ARG37 4.9 62.9 1.0 N 5:GLY51 4.9 239.7 1.0 O 5:CYS43 5.0 163.7 1.0

Zinc binding site 2 out of 2 in the Cryo-Em Structure of Hflxr Bound to the Listeria Monocytogenes 50S Ribosomal Subunit.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of Hflxr Bound to the Listeria Monocytogenes 50S Ribosomal Subunit. within 5.0Å range: probe atom residue distance (Å) B Occ 9:Zn101 b:54.2 occ:1.00 ND1 9:HIS32 2.0 50.5 1.0 SG 9:CYS14 2.3 62.6 1.0 SG 9:CYS27 2.3 56.4 1.0 SG 9:CYS11 2.3 66.4 1.0 CE1 9:HIS32 3.0 50.7 1.0 CG 9:HIS32 3.0 47.1 1.0 CB 9:CYS27 3.3 53.3 1.0 CB 9:HIS32 3.4 44.1 1.0 CB 9:CYS11 3.5 69.8 1.0 N 9:CYS11 3.5 65.0 1.0 CB 9:CYS14 3.6 65.9 1.0 N 9:CYS14 3.6 70.8 1.0 CA 9:CYS14 3.8 65.2 1.0 CA 9:CYS11 3.9 71.3 1.0 NE2 9:HIS32 4.1 50.1 1.0 CD2 9:HIS32 4.2 48.4 1.0 C 9:CYS11 4.4 75.4 1.0 C 9:LYS13 4.4 80.1 1.0 C 9:MET10 4.5 61.7 1.0 O 9:CYS11 4.6 77.5 1.0 CB 9:ASN29 4.7 55.1 1.0 CA 9:CYS27 4.7 54.8 1.0 CB 9:MET10 4.7 62.2 1.0 N 9:MET10 4.7 53.8 1.0 CB 9:LYS13 4.8 93.3 1.0 N 9:LYS13 4.8 84.3 1.0 CA 9:HIS32 4.9 43.0 1.0 CA 9:LYS13 4.9 85.5 1.0 CA 9:MET10 4.9 58.2 1.0 O 9:ASN29 5.0 47.1 1.0

T.O.Koller, K.J.Turnbull, K.Vaitkevicius, C.Crowe-Mcauliffe, M.Roghanian, O.Bulvas, J.A.Nakamoto, T.Kurata, C.Julius, G.C.Atkinson, J.Johansson, V.Hauryliuk, D.N.Wilson. Structural Basis For Hflxr-Mediated Antibiotic Resistance in Listeria Monocytogenes. Nucleic Acids Res. V. 50 11285 2022.
ISSN: ESSN 1362-4962
PubMed: 36300626
DOI: 10.1093/NAR/GKAC934