Zinc in PDB 8a3t: S. Cerevisiae Apc/C-CDH1 Complex

Zinc Binding Sites:

The binding sites of Zinc atom in the S. Cerevisiae Apc/C-CDH1 Complex (pdb code 8a3t). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the S. Cerevisiae Apc/C-CDH1 Complex, PDB code: 8a3t:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in 8a3t

Go back to Zinc Binding Sites List in 8a3t
Zinc binding site 1 out of 3 in the S. Cerevisiae Apc/C-CDH1 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of S. Cerevisiae Apc/C-CDH1 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
U:Zn201

b:403.7
occ:1.00
 ND1 U:HIS76 2.1 336.0 1.0
SG U:CYS52 2.3 348.1 1.0
SG U:CYS55 2.3 343.0 1.0
SG U:CYS62 2.3 324.6 1.0
CE1 U:HIS76 2.9 336.0 1.0
CG U:HIS76 3.2 336.0 1.0
CB U:CYS55 3.2 343.0 1.0
CB U:CYS62 3.3 324.6 1.0
CB U:CYS52 3.5 348.1 1.0
CB U:HIS76 3.6 336.0 1.0
CA U:CYS62 3.9 324.6 1.0
NE2 U:HIS76 4.0 336.0 1.0
OG U:SER54 4.1 347.1 1.0
CD2 U:HIS76 4.2 336.0 1.0
N U:CYS52 4.2 348.1 1.0
N U:CYS55 4.2 343.0 1.0
CA U:CYS55 4.3 343.0 1.0
CA U:CYS52 4.4 348.1 1.0
O U:GLN61 4.4 314.1 1.0
N U:HIS76 4.5 336.0 1.0
CB U:HIS74 4.5 328.4 1.0
CA U:HIS76 4.7 336.0 1.0
C U:CYS62 4.8 324.6 1.0
O U:CYS52 4.9 348.1 1.0
C U:SER54 4.9 347.1 1.0
C U:CYS52 4.9 348.1 1.0
N U:CYS62 4.9 324.6 1.0

Zinc binding site 2 out of 3 in 8a3t

Go back to Zinc Binding Sites List in 8a3t
Zinc binding site 2 out of 3 in the S. Cerevisiae Apc/C-CDH1 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of S. Cerevisiae Apc/C-CDH1 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
U:Zn202

b:386.9
occ:1.00
 ND1 U:HIS71 2.1 340.1 1.0
SG U:CYS69 2.3 338.4 1.0
SG U:CYS91 2.3 351.9 1.0
SG U:CYS94 2.3 357.6 1.0
CE1 U:HIS71 2.8 340.1 1.0
CB U:CYS91 3.1 351.9 1.0
CB U:CYS69 3.1 338.4 1.0
CG U:HIS71 3.2 340.1 1.0
CB U:CYS94 3.3 357.6 1.0
N U:CYS94 3.6 357.6 1.0
CB U:HIS71 3.7 340.1 1.0
NE2 U:HIS71 4.0 340.1 1.0
CA U:CYS94 4.0 357.6 1.0
CD2 U:HIS71 4.2 340.1 1.0
CB U:MET93 4.4 352.8 1.0
CA U:CYS69 4.5 338.4 1.0
C U:MET93 4.5 352.8 1.0
CA U:CYS91 4.5 351.9 1.0
O U:CYS69 4.5 338.4 1.0
N U:MET93 4.7 352.8 1.0
C U:CYS69 4.7 338.4 1.0
CA U:MET93 4.8 352.8 1.0
C U:CYS94 4.8 357.6 1.0
N U:HIS71 4.9 340.1 1.0
CG U:MET93 4.9 352.8 1.0
CA U:HIS71 4.9 340.1 1.0
C U:CYS91 4.9 351.9 1.0
N U:ARG95 5.0 354.4 1.0

Zinc binding site 3 out of 3 in 8a3t

Go back to Zinc Binding Sites List in 8a3t
Zinc binding site 3 out of 3 in the S. Cerevisiae Apc/C-CDH1 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of S. Cerevisiae Apc/C-CDH1 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
U:Zn203

b:350.6
occ:1.00
 ND1 U:HIS74 2.1 328.4 1.0
SG U:CYS44 2.3 332.1 1.0
SG U:CYS77 2.3 331.3 1.0
SG U:CYS41 2.3 325.8 1.0
CB U:CYS41 2.8 325.8 1.0
CE1 U:HIS74 3.0 328.4 1.0
CG U:HIS74 3.1 328.4 1.0
CB U:CYS44 3.2 332.1 1.0
CB U:CYS77 3.3 331.3 1.0
CB U:HIS74 3.4 328.4 1.0
N U:CYS44 3.8 332.1 1.0
N U:HIS74 4.0 328.4 1.0
CB U:CYS52 4.1 348.1 1.0
CA U:CYS44 4.1 332.1 1.0
NE2 U:HIS74 4.2 328.4 1.0
CD2 U:HIS74 4.2 328.4 1.0
CA U:HIS74 4.3 328.4 1.0
CA U:CYS41 4.3 325.8 1.0
CA U:CYS77 4.7 331.3 1.0
CA U:CYS52 4.8 348.1 1.0
C U:CYS44 4.9 332.1 1.0
C U:CYS41 4.9 325.8 1.0
C U:ILE43 5.0 327.7 1.0
CB U:ILE43 5.0 327.7 1.0
N U:ARG45 5.0 330.2 1.0

Reference:

D.Barford, E.Vazquez-Fernandez, Z.Zhang, J.Yang. Cryo-Em Structure of the S. Cerevisiae Apc/C-CDH1 Complex To Be Published.
Page generated: Sat Apr 8 07:29:07 2023

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