Zinc in PDB, part 418 (files: 16681-16720),
PDB 6zym-7a9a
Experimental structures of coordination spheres of Zinc (Zn) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Zinc atoms. PDB files: 16681-16720 (PDB 6zym-7a9a).
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6zym (Zn: 7) - Human C Complex Spliceosome - High-Resolution Core
Other atoms:
Mg (5);
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6zyn (Zn: 6) - Structure of Vim-2 with 2-Mercaptomethyl-Thiazolidine L-Anti-1B
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6zyo (Zn: 6) - Structure of Vim-2 with 2-Mercaptomethyl-Thiazolidine D-Syn-1B
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6zyp (Zn: 4) - Structure of Ndm-1 with 2-Mercaptomethyl-Thiazolidine L-Anti-1B
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6zyq (Zn: 4) - Structure of Ndm-1 with 2-Mercaptomethyl-Thiazolidine D-Syn-1B
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6zyr (Zn: 8) - Structure of Imp-1 with 2-Mercaptomethyl-Thiazolidine L-Anti-1B
Other atoms:
Na (1);
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6zys (Zn: 8) - Structure of Imp-1 with 2-Mercaptomethyl-Thiazolidine D-Syn-1B
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6zyu (Zn: 8) - Structure of the GLUA2 Ligand-Binding Domain (L483Y-N754S) in Complex with Glutamate and BPAM549
Other atoms:
Cl (5);
F (6);
As (1);
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7a08 (Zn: 1) - Cryoem Structure of Cgas Nucleosome Complex
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7a0b (Zn: 1) - Trna-Guanine Transglycosylase C158S/C281S/Y330C/H333A Mutant in Complex with Rac-Trans-3,4-Dihydroxysulfolane
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7a0p (Zn: 1) - Neisseria Gonorrhoeae Leucyl-Trna Synthetase in Complex with Compound 11I
Other atoms:
Mg (1);
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7a1g (Zn: 2) - Structure of A Crosslinked Yeast ABCE1-Bound 43S Pre-Initiation Complex
Other atoms:
Mg (80);
Fe (8);
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7a1j (Zn: 1) - Factor Inhibiting Hif-1 Alpha in Complex with Zn(II) and 3-(3- Phenylpropyl)-2-Oxoglutarate
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7a1k (Zn: 1) - Factor Inhibiting Hif-1 Alpha in Complex with Zn(II) and 3-((9,9- Dimethyl-9H-Fluoren-2-Yl)Methyl)-2-Oxoglutarate
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7a1l (Zn: 1) - Factor Inhibiting Hif-1 Alpha in Complex with Zn(II) and 3-Methyl-2- Oxoglutarate
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7a1m (Zn: 1) - Factor Inhibiting Hif-1 Alpha in Complex with Zn(II) and 3-Propyl-2- Oxoglutarate
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7a1n (Zn: 1) - Factor Inhibiting Hif-1 Alpha in Complex with Zn(II), 3-Methyl-2- Oxoglutarate, and Consensus Ankyrin Repeat Domain (20-Mer)
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7a1o (Zn: 1) - Factor Inhibiting Hif-1 Alpha in Complex with Zn(II), 4-Ethyl-2- Oxoglutarate, and Consensus Ankyrin Repeat Domain (20-Mer)
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7a1p (Zn: 1) - Factor Inhibiting Hif-1 Alpha in Complex with Zn(II), 4-Propyl-2- Oxoglutarate, and Consensus Ankyrin Repeat Domain (20-Mer)
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7a1q (Zn: 1) - Factor Inhibiting Hif-1 Alpha in Complex with Zn(II), 3- (Carboxycarbonyl)Cyclopentane-1-Carboxylic Acid, and Consensus Ankyrin Repeat Domain (20-Mer)
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7a1s (Zn: 1) - Factor Inhibiting Hif-1 Alpha in Complex with Zn(II), 3-Methyl-2- Oxoglutarate, and Tankyrase-2 (TNKS2) Fragment Peptide (21-Mer)
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7a23 (Zn: 2) - Plant Mitochondrial Respiratory Complex I
Other atoms:
Fe (28);
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7a24 (Zn: 2) - Assembly Intermediate of the Plant Mitochondrial Complex I
Other atoms:
Fe (28);
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7a28 (Zn: 2) - Crystal Structure of T. Brucei Pde-B1 Catalytic Domain with Inhibitor Npd-617
Other atoms:
Mg (2);
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7a2f (Zn: 2) - Crystal Structure of T. Brucei Pde-B1 Catalytic Domain with Inhibitor Npd-656
Other atoms:
Mg (2);
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7a3v (Zn: 1) - Trna-Guanine Transglycosylase C158S/C281S/Y330C/H333A Mutant in Complex with 3-Hydroxysulfolane
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7a3x (Zn: 1) - Trna-Guanine Transglycosylase C158S/C281S/Y330C/H333A Mutant in Complex with Sulfolane
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7a4k (Zn: 1) - Trna-Guanine Transglycosylase C158S/C281S/Y330C/H333A Mutant in Complex with Tetramethylene Sulfoxide
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7a4m (Zn: 1) - Cryo-Em Structure of Mouse Heavy-Chain Apoferritin at 1.22 A
Other atoms:
Fe (1);
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7a4x (Zn: 1) - Trna-Guanine Transglycosylase C158S/C281S/Y330C/H333A Mutant in Complex with Dimethyl Sulfoxide
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7a5z (Zn: 3) - Structure of Vim-2 Metallo-Beta-Lactamase with Hydrolysed Faropenem Imine Product
Other atoms:
Na (1);
Mg (1);
Cl (2);
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7a60 (Zn: 6) - Crystal Structure of Vim-2 with Hydrolyzed Faropenem (Ring-Open Form)
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7a63 (Zn: 3) - Crystal Structure of L1 with Hydrolyzed Faropenem (Imine, Ring-Closed Form)
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7a6d (Zn: 1) - Trna-Guanine Transglycosylase C158S/C281S/Y330C/H333A Mutant in Complex with Rac-Trans-4,4-Difluorocyclopentane-1,2-Diol
Other atoms:
F (4);
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7a6h (Zn: 7) - Cryo-Em Structure of Human Apo Rna Polymerase III
Other atoms:
Mg (1);
Fe (4);
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7a6u (Zn: 4) - Cryo-Em Structure of the Cytoplasmic Domain of Human TRPC6
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7a91 (Zn: 1) - Dissociated S1 Domain of Sars-Cov-2 Spike Bound to ACE2 (Non-Uniform Refinement)
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7a92 (Zn: 1) - Dissociated S1 Domain of Sars-Cov-2 Spike Bound to ACE2 (Unmasked Refinement)
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7a94 (Zn: 1) - Sars-Cov-2 Spike Glycoprotein with 1 ACE2 Bound
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7a9a (Zn: 43) - Crystal Structure of Rubredoxin B (RV3250C) From Mycobacterium Tuberculosis
Other atoms:
Cl (1);
Fe (8);
Page generated: Fri Sep 24 17:02:37 2021
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