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Zinc in PDB, part 418 (files: 16681-16720), PDB 6zym-7a9a

Experimental structures of coordination spheres of Zinc (Zn) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Zinc atoms. PDB files: 16681-16720 (PDB 6zym-7a9a).
  1. 6zym (Zn: 7) - Human C Complex Spliceosome - High-Resolution Core
    Other atoms: Mg (5);
  2. 6zyn (Zn: 6) - Structure of Vim-2 with 2-Mercaptomethyl-Thiazolidine L-Anti-1B
  3. 6zyo (Zn: 6) - Structure of Vim-2 with 2-Mercaptomethyl-Thiazolidine D-Syn-1B
  4. 6zyp (Zn: 4) - Structure of Ndm-1 with 2-Mercaptomethyl-Thiazolidine L-Anti-1B
  5. 6zyq (Zn: 4) - Structure of Ndm-1 with 2-Mercaptomethyl-Thiazolidine D-Syn-1B
  6. 6zyr (Zn: 8) - Structure of Imp-1 with 2-Mercaptomethyl-Thiazolidine L-Anti-1B
    Other atoms: Na (1);
  7. 6zys (Zn: 8) - Structure of Imp-1 with 2-Mercaptomethyl-Thiazolidine D-Syn-1B
  8. 6zyu (Zn: 8) - Structure of the GLUA2 Ligand-Binding Domain (L483Y-N754S) in Complex with Glutamate and BPAM549
    Other atoms: Cl (5); F (6); As (1);
  9. 7a08 (Zn: 1) - Cryoem Structure of Cgas Nucleosome Complex
  10. 7a0b (Zn: 1) - Trna-Guanine Transglycosylase C158S/C281S/Y330C/H333A Mutant in Complex with Rac-Trans-3,4-Dihydroxysulfolane
  11. 7a0p (Zn: 1) - Neisseria Gonorrhoeae Leucyl-Trna Synthetase in Complex with Compound 11I
    Other atoms: Mg (1);
  12. 7a1g (Zn: 2) - Structure of A Crosslinked Yeast ABCE1-Bound 43S Pre-Initiation Complex
    Other atoms: Mg (80); Fe (8);
  13. 7a1j (Zn: 1) - Factor Inhibiting Hif-1 Alpha in Complex with Zn(II) and 3-(3- Phenylpropyl)-2-Oxoglutarate
  14. 7a1k (Zn: 1) - Factor Inhibiting Hif-1 Alpha in Complex with Zn(II) and 3-((9,9- Dimethyl-9H-Fluoren-2-Yl)Methyl)-2-Oxoglutarate
  15. 7a1l (Zn: 1) - Factor Inhibiting Hif-1 Alpha in Complex with Zn(II) and 3-Methyl-2- Oxoglutarate
  16. 7a1m (Zn: 1) - Factor Inhibiting Hif-1 Alpha in Complex with Zn(II) and 3-Propyl-2- Oxoglutarate
  17. 7a1n (Zn: 1) - Factor Inhibiting Hif-1 Alpha in Complex with Zn(II), 3-Methyl-2- Oxoglutarate, and Consensus Ankyrin Repeat Domain (20-Mer)
  18. 7a1o (Zn: 1) - Factor Inhibiting Hif-1 Alpha in Complex with Zn(II), 4-Ethyl-2- Oxoglutarate, and Consensus Ankyrin Repeat Domain (20-Mer)
  19. 7a1p (Zn: 1) - Factor Inhibiting Hif-1 Alpha in Complex with Zn(II), 4-Propyl-2- Oxoglutarate, and Consensus Ankyrin Repeat Domain (20-Mer)
  20. 7a1q (Zn: 1) - Factor Inhibiting Hif-1 Alpha in Complex with Zn(II), 3- (Carboxycarbonyl)Cyclopentane-1-Carboxylic Acid, and Consensus Ankyrin Repeat Domain (20-Mer)
  21. 7a1s (Zn: 1) - Factor Inhibiting Hif-1 Alpha in Complex with Zn(II), 3-Methyl-2- Oxoglutarate, and Tankyrase-2 (TNKS2) Fragment Peptide (21-Mer)
  22. 7a23 (Zn: 2) - Plant Mitochondrial Respiratory Complex I
    Other atoms: Fe (28);
  23. 7a24 (Zn: 2) - Assembly Intermediate of the Plant Mitochondrial Complex I
    Other atoms: Fe (28);
  24. 7a28 (Zn: 2) - Crystal Structure of T. Brucei Pde-B1 Catalytic Domain with Inhibitor Npd-617
    Other atoms: Mg (2);
  25. 7a2f (Zn: 2) - Crystal Structure of T. Brucei Pde-B1 Catalytic Domain with Inhibitor Npd-656
    Other atoms: Mg (2);
  26. 7a3v (Zn: 1) - Trna-Guanine Transglycosylase C158S/C281S/Y330C/H333A Mutant in Complex with 3-Hydroxysulfolane
  27. 7a3x (Zn: 1) - Trna-Guanine Transglycosylase C158S/C281S/Y330C/H333A Mutant in Complex with Sulfolane
  28. 7a4k (Zn: 1) - Trna-Guanine Transglycosylase C158S/C281S/Y330C/H333A Mutant in Complex with Tetramethylene Sulfoxide
  29. 7a4m (Zn: 1) - Cryo-Em Structure of Mouse Heavy-Chain Apoferritin at 1.22 A
    Other atoms: Fe (1);
  30. 7a4x (Zn: 1) - Trna-Guanine Transglycosylase C158S/C281S/Y330C/H333A Mutant in Complex with Dimethyl Sulfoxide
  31. 7a5z (Zn: 3) - Structure of Vim-2 Metallo-Beta-Lactamase with Hydrolysed Faropenem Imine Product
    Other atoms: Na (1); Mg (1); Cl (2);
  32. 7a60 (Zn: 6) - Crystal Structure of Vim-2 with Hydrolyzed Faropenem (Ring-Open Form)
  33. 7a63 (Zn: 3) - Crystal Structure of L1 with Hydrolyzed Faropenem (Imine, Ring-Closed Form)
  34. 7a6d (Zn: 1) - Trna-Guanine Transglycosylase C158S/C281S/Y330C/H333A Mutant in Complex with Rac-Trans-4,4-Difluorocyclopentane-1,2-Diol
    Other atoms: F (4);
  35. 7a6h (Zn: 7) - Cryo-Em Structure of Human Apo Rna Polymerase III
    Other atoms: Mg (1); Fe (4);
  36. 7a6u (Zn: 4) - Cryo-Em Structure of the Cytoplasmic Domain of Human TRPC6
  37. 7a91 (Zn: 1) - Dissociated S1 Domain of Sars-Cov-2 Spike Bound to ACE2 (Non-Uniform Refinement)
  38. 7a92 (Zn: 1) - Dissociated S1 Domain of Sars-Cov-2 Spike Bound to ACE2 (Unmasked Refinement)
  39. 7a94 (Zn: 1) - Sars-Cov-2 Spike Glycoprotein with 1 ACE2 Bound
  40. 7a9a (Zn: 43) - Crystal Structure of Rubredoxin B (RV3250C) From Mycobacterium Tuberculosis
    Other atoms: Cl (1); Fe (8);
Page generated: Fri Sep 24 17:02:37 2021

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