Zinc in PDB 6ygu: Crystal Structure of the Minimal MTR4-RED1 Complex (Single Chain) From Chaetomium Thermophilum

The structure of Crystal Structure of the Minimal MTR4-RED1 Complex (Single Chain) From Chaetomium Thermophilum, PDB code: 6ygu was solved by N.Dobrev, Y.L.Ahmed, I.Sinning, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.46 / 1.99
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	44.979, 88.906, 168.367, 90, 90, 90
R / Rfree (%)	20.5 / 25.2

The binding sites of Zinc atom in the Crystal Structure of the Minimal MTR4-RED1 Complex (Single Chain) From Chaetomium Thermophilum (pdb code 6ygu). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of the Minimal MTR4-RED1 Complex (Single Chain) From Chaetomium Thermophilum, PDB code: 6ygu:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of the Minimal MTR4-RED1 Complex (Single Chain) From Chaetomium Thermophilum


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Minimal MTR4-RED1 Complex (Single Chain) From Chaetomium Thermophilum within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1103 b:50.1 occ:1.00 NE2 B:HIS1074 2.1 45.1 1.0 SG B:CYS1066 2.2 47.5 1.0 SG B:CYS1070 2.3 51.9 1.0 SG B:CYS1057 2.4 42.6 1.0 CE1 B:HIS1074 3.0 45.3 1.0 CD2 B:HIS1074 3.1 42.8 1.0 CB B:CYS1066 3.2 47.6 1.0 CB B:CYS1070 3.2 52.0 1.0 CB B:CYS1057 3.3 38.9 1.0 ND1 B:HIS1074 4.1 46.0 1.0 CA B:CYS1066 4.2 47.5 1.0 CG B:HIS1074 4.2 39.8 1.0 CD2 B:TYR1059 4.3 44.3 1.0 CB B:PHE1072 4.6 37.9 1.0 CA B:CYS1057 4.6 36.9 1.0 CA B:CYS1070 4.6 50.9 1.0 CD2 B:PHE1072 4.7 42.2 1.0 CB B:TYR1059 4.8 38.2 1.0 C B:CYS1070 4.9 51.5 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of the Minimal MTR4-RED1 Complex (Single Chain) From Chaetomium Thermophilum


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of the Minimal MTR4-RED1 Complex (Single Chain) From Chaetomium Thermophilum within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn1101 b:48.6 occ:1.00 NE2 D:HIS1074 2.0 47.0 1.0 SG D:CYS1070 2.3 42.1 1.0 SG D:CYS1057 2.3 40.3 1.0 SG D:CYS1066 2.4 46.9 1.0 CD2 D:HIS1074 2.9 44.7 1.0 CE1 D:HIS1074 3.1 41.7 1.0 CB D:CYS1070 3.3 45.7 1.0 CB D:CYS1066 3.3 54.4 1.0 CB D:CYS1057 3.3 38.1 1.0 CG D:HIS1074 4.1 42.3 1.0 ND1 D:HIS1074 4.2 43.3 1.0 CD2 D:TYR1059 4.2 43.0 1.0 CA D:CYS1066 4.4 54.9 1.0 CB D:PHE1072 4.5 41.4 1.0 CA D:CYS1057 4.6 40.6 1.0 CA D:CYS1070 4.6 48.8 1.0 CB D:TYR1059 4.8 47.3 1.0 CD2 D:PHE1072 4.8 45.8 1.0 C D:CYS1070 4.9 48.6 1.0 O D:CYS1070 4.9 47.2 1.0 N D:GLU1060 5.0 47.1 1.0 CG D:TYR1059 5.0 48.5 1.0

N.Dobrev, Y.L.Ahmed, A.Sivadas, K.Soni, T.Fischer, I.Sinning. The Zinc-Finger Protein RED1 Orchestrates Mtrec Submodules and Binds the MTL1 Helicase Arch Domain Nat Commun 2021.
ISSN: ESSN 2041-1723