Zinc in PDB 6yfv: Crystal Structure of MTR4-RED1 Minimal Complex From Chaetomium Thermophilum

The structure of Crystal Structure of MTR4-RED1 Minimal Complex From Chaetomium Thermophilum, PDB code: 6yfv was solved by N.Dobrev, Y.L.Ahmed, I.Sinning, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.71 / 2.75
Space group	P 65 2 2
Cell size a, b, c (Å), α, β, γ (°)	172.186, 172.186, 145.078, 90, 90, 120
R / Rfree (%)	21.5 / 25.7

The binding sites of Zinc atom in the Crystal Structure of MTR4-RED1 Minimal Complex From Chaetomium Thermophilum (pdb code 6yfv). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of MTR4-RED1 Minimal Complex From Chaetomium Thermophilum, PDB code: 6yfv:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of MTR4-RED1 Minimal Complex From Chaetomium Thermophilum


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of MTR4-RED1 Minimal Complex From Chaetomium Thermophilum within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1101 b:84.5 occ:1.00 NE2 B:HIS1074 2.1 89.5 1.0 SG B:CYS1066 2.2 85.7 1.0 SG B:CYS1070 2.3 78.3 1.0 SG B:CYS1057 2.3 76.1 1.0 CB B:CYS1066 3.0 78.8 1.0 CD2 B:HIS1074 3.0 89.2 1.0 CE1 B:HIS1074 3.1 79.1 1.0 CB B:CYS1070 3.3 74.5 1.0 CB B:CYS1057 3.4 69.0 1.0 CA B:CYS1066 4.2 86.2 1.0 ND1 B:HIS1074 4.2 78.8 1.0 CG B:HIS1074 4.2 75.9 1.0 CD2 B:TYR1059 4.2 83.3 1.0 CA B:CYS1070 4.6 74.6 1.0 CB B:PHE1072 4.7 80.5 1.0 CA B:CYS1057 4.7 65.3 1.0 CB B:TYR1059 4.7 76.3 1.0 CD2 B:PHE1072 4.8 70.4 1.0 O B:CYS1070 4.9 81.9 1.0 C B:CYS1070 4.9 75.4 1.0 N B:GLU1060 4.9 76.0 1.0 CG B:TYR1059 5.0 88.1 1.0 N B:CYS1066 5.0 95.8 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of MTR4-RED1 Minimal Complex From Chaetomium Thermophilum


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of MTR4-RED1 Minimal Complex From Chaetomium Thermophilum within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn1101 b:190.1 occ:1.00 NE2 D:HIS1074 2.1 184.4 1.0 SG D:CYS1070 2.4 174.5 1.0 SG D:CYS1066 2.5 196.0 1.0 SG D:CYS1057 2.5 181.4 1.0 CE1 D:HIS1074 2.6 182.2 1.0 CB D:CYS1057 3.2 183.9 1.0 CD2 D:HIS1074 3.4 180.1 1.0 CB D:CYS1070 3.8 183.0 1.0 CB D:CYS1066 3.8 196.0 1.0 ND1 D:HIS1074 3.9 177.8 1.0 CD2 D:TYR1059 3.9 187.8 1.0 CG D:HIS1074 4.3 176.3 1.0 CA D:CYS1066 4.4 196.0 1.0 CA D:CYS1057 4.5 177.0 1.0 CB D:PHE1072 4.6 176.0 1.0 CE2 D:TYR1059 4.6 185.6 1.0 CD D:PRO1067 4.7 196.8 1.0 CB D:TYR1059 4.8 185.9 1.0 CG D:TYR1059 4.8 187.5 1.0 O D:PHE1072 4.9 185.6 1.0

N.Dobrev, Y.L.Ahmed, A.Sivadas, K.Soni, T.Fischer, I.Sinning. The Zinc-Finger Protein RED1 Orchestrates Mtrec Submodules and Binds the MTL1 Helicase Arch Domain Nat Commun 2021.
ISSN: ESSN 2041-1723