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Zinc in PDB 8b5w: Crystal Structure of the E3 Module From UBR4

Protein crystallography data

The structure of Crystal Structure of the E3 Module From UBR4, PDB code: 8b5w was solved by S.Virdee, P.D.Mabbitt, L.Barnsby-Greer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 74.07 / 1.80
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 67.131, 84.644, 148.13, 90, 90, 90
R / Rfree (%) 19.8 / 22.2

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of the E3 Module From UBR4 (pdb code 8b5w). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of the E3 Module From UBR4, PDB code: 8b5w:

Zinc binding site 1 out of 1 in 8b5w

Go back to Zinc Binding Sites List in 8b5w
Zinc binding site 1 out of 1 in the Crystal Structure of the E3 Module From UBR4


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the E3 Module From UBR4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn5201

b:37.2
occ:1.00
ND1 A:HIS4887 2.2 26.8 1.0
SG A:CYS4890 2.3 31.2 1.0
SG A:CYS4841 2.4 32.1 1.0
SG A:CYS4838 2.5 27.8 1.0
CB A:CYS4838 3.1 28.8 1.0
CG A:HIS4887 3.1 25.8 1.0
CE1 A:HIS4887 3.2 30.2 1.0
CB A:CYS4841 3.3 30.4 1.0
CB A:HIS4887 3.3 28.6 1.0
CB A:CYS4890 3.3 28.6 1.0
N A:CYS4841 3.9 34.8 1.0
N A:HIS4887 4.1 27.2 1.0
CA A:CYS4841 4.2 34.8 1.0
O A:HOH5498 4.2 37.6 1.0
CD2 A:HIS4887 4.3 27.5 1.0
NE2 A:HIS4887 4.3 26.0 1.0
CA A:HIS4887 4.3 26.1 1.0
CA A:CYS4838 4.6 28.7 1.0
CA A:CYS4890 4.7 31.7 1.0
CB A:ILE4840 4.7 35.8 1.0
O A:HOH5586 4.7 49.8 1.0
N A:CYS4890 4.9 34.4 1.0
C A:CYS4841 4.9 36.0 1.0
O A:GLU4843 4.9 29.3 1.0
C A:ILE4840 5.0 37.2 1.0

Reference:

S.Virdee, P.D.Mabbitt, L.Barnsby-Greer. Crystal Structure of the E3 Module From UBR4 To Be Published.
Page generated: Thu Dec 28 12:50:16 2023

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