Zinc in PDB 8b3d: Structure of the Pol II-Tcr-ELOF1 Complex.
Enzymatic activity of Structure of the Pol II-Tcr-ELOF1 Complex.
All present enzymatic activity of Structure of the Pol II-Tcr-ELOF1 Complex.:
2.7.7.6;
Other elements in 8b3d:
The structure of Structure of the Pol II-Tcr-ELOF1 Complex. also contains other interesting chemical elements:
Zinc Binding Sites:
The binding sites of Zinc atom in the Structure of the Pol II-Tcr-ELOF1 Complex.
(pdb code 8b3d). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 10 binding sites of Zinc where determined in the
Structure of the Pol II-Tcr-ELOF1 Complex., PDB code: 8b3d:
Jump to Zinc binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Zinc binding site 1 out
of 10 in 8b3d
Go back to
Zinc Binding Sites List in 8b3d
Zinc binding site 1 out
of 10 in the Structure of the Pol II-Tcr-ELOF1 Complex.
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Structure of the Pol II-Tcr-ELOF1 Complex. within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn2001
b:40.3
occ:1.00
|
NE2
|
A:HIS84
|
2.1
|
11.9
|
1.0
|
|
SG
|
A:CYS74
|
2.3
|
19.3
|
1.0
|
|
SG
|
A:CYS81
|
2.3
|
14.6
|
1.0
|
|
SG
|
A:CYS71
|
2.3
|
22.3
|
1.0
|
|
HD2
|
A:HIS84
|
2.5
|
11.9
|
1.0
|
|
CD2
|
A:HIS84
|
2.6
|
11.9
|
1.0
|
|
HA2
|
A:GLY63
|
2.9
|
17.0
|
1.0
|
|
HB3
|
A:CYS71
|
3.1
|
22.3
|
1.0
|
|
HB2
|
A:CYS71
|
3.1
|
22.3
|
1.0
|
|
CB
|
A:CYS71
|
3.1
|
22.3
|
1.0
|
|
H
|
A:CYS74
|
3.3
|
19.3
|
1.0
|
|
CE1
|
A:HIS84
|
3.3
|
11.9
|
1.0
|
|
HB
|
A:THR73
|
3.6
|
18.7
|
1.0
|
|
CB
|
A:CYS81
|
3.7
|
14.6
|
1.0
|
|
HB2
|
A:CYS81
|
3.7
|
14.6
|
1.0
|
|
O
|
A:PRO82
|
3.7
|
11.0
|
1.0
|
|
HE1
|
A:HIS84
|
3.7
|
11.9
|
1.0
|
|
CB
|
A:CYS74
|
3.8
|
19.3
|
1.0
|
|
CG
|
A:HIS84
|
3.9
|
11.9
|
1.0
|
|
CA
|
A:GLY63
|
3.9
|
17.0
|
1.0
|
|
HB3
|
A:CYS74
|
4.0
|
19.3
|
1.0
|
|
N
|
A:CYS74
|
4.1
|
19.3
|
1.0
|
|
ND1
|
A:HIS84
|
4.2
|
11.9
|
1.0
|
|
HA
|
A:CYS81
|
4.2
|
14.6
|
1.0
|
|
H
|
A:THR73
|
4.3
|
18.7
|
1.0
|
|
H
|
A:GLY76
|
4.4
|
19.2
|
1.0
|
|
HA3
|
A:GLY63
|
4.4
|
17.0
|
1.0
|
|
HD2
|
A:PRO82
|
4.4
|
11.0
|
1.0
|
|
HB3
|
A:CYS81
|
4.4
|
14.6
|
1.0
|
|
N
|
A:GLY63
|
4.4
|
17.0
|
1.0
|
|
CA
|
A:CYS81
|
4.4
|
14.6
|
1.0
|
|
HG23
|
A:VAL64
|
4.5
|
19.9
|
1.0
|
|
HB2
|
A:CYS74
|
4.5
|
19.3
|
1.0
|
|
CA
|
A:CYS74
|
4.5
|
19.3
|
1.0
|
|
H
|
A:GLY63
|
4.5
|
17.0
|
1.0
|
|
CB
|
A:THR73
|
4.6
|
18.7
|
1.0
|
|
CA
|
A:CYS71
|
4.6
|
22.3
|
1.0
|
|
C
|
A:GLY63
|
4.7
|
17.0
|
1.0
|
|
HA2
|
A:GLY83
|
4.7
|
12.2
|
1.0
|
|
C
|
A:PRO82
|
4.7
|
11.0
|
1.0
|
|
C
|
A:CYS81
|
4.7
|
14.6
|
1.0
|
|
H
|
A:ALA75
|
4.8
|
22.6
|
1.0
|
|
HG22
|
A:VAL64
|
4.8
|
19.9
|
1.0
|
|
HA
|
A:CYS71
|
4.9
|
22.3
|
1.0
|
|
H
|
A:HIS84
|
4.9
|
11.9
|
1.0
|
|
N
|
A:PRO82
|
5.0
|
11.0
|
1.0
|
|
Zinc binding site 2 out
of 10 in 8b3d
Go back to
Zinc Binding Sites List in 8b3d
Zinc binding site 2 out
of 10 in the Structure of the Pol II-Tcr-ELOF1 Complex.
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Structure of the Pol II-Tcr-ELOF1 Complex. within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn2002
b:51.9
occ:1.00
|
HG
|
A:CYS114
|
1.9
|
30.6
|
1.0
|
|
SG
|
A:CYS111
|
2.3
|
31.8
|
1.0
|
|
SG
|
A:CYS184
|
2.3
|
35.0
|
1.0
|
|
SG
|
A:CYS154
|
2.3
|
35.1
|
1.0
|
|
SG
|
A:CYS114
|
2.3
|
30.6
|
1.0
|
|
HB2
|
A:CYS154
|
2.4
|
35.1
|
1.0
|
|
CB
|
A:CYS154
|
2.6
|
35.1
|
1.0
|
|
H
|
A:CYS184
|
2.7
|
35.0
|
1.0
|
|
HB3
|
A:CYS154
|
2.7
|
35.1
|
1.0
|
|
H
|
A:CYS114
|
2.8
|
30.6
|
1.0
|
|
HB2
|
A:CYS111
|
3.3
|
31.8
|
1.0
|
|
CB
|
A:CYS111
|
3.3
|
31.8
|
1.0
|
|
N
|
A:CYS184
|
3.5
|
35.0
|
1.0
|
|
HB3
|
A:CYS111
|
3.5
|
31.8
|
1.0
|
|
CB
|
A:CYS184
|
3.6
|
35.0
|
1.0
|
|
HB3
|
A:CYS184
|
3.6
|
35.0
|
1.0
|
|
HB2
|
A:PHE113
|
3.6
|
31.0
|
1.0
|
|
N
|
A:CYS114
|
3.6
|
30.6
|
1.0
|
|
CB
|
A:CYS114
|
3.7
|
30.6
|
1.0
|
|
HB3
|
A:CYS114
|
3.9
|
30.6
|
1.0
|
|
H
|
A:PHE113
|
4.0
|
31.0
|
1.0
|
|
CA
|
A:CYS184
|
4.1
|
35.0
|
1.0
|
|
CA
|
A:CYS154
|
4.1
|
35.1
|
1.0
|
|
HD2
|
A:PHE113
|
4.2
|
31.0
|
1.0
|
|
CA
|
A:CYS114
|
4.2
|
30.6
|
1.0
|
|
H
|
A:GLY185
|
4.3
|
32.4
|
1.0
|
|
H
|
A:ARG186
|
4.3
|
33.5
|
1.0
|
|
HB2
|
A:CYS114
|
4.3
|
30.6
|
1.0
|
|
HB2
|
A:CYS184
|
4.3
|
35.0
|
1.0
|
|
HA2
|
A:GLY183
|
4.4
|
31.4
|
1.0
|
|
HA
|
A:CYS154
|
4.4
|
35.1
|
1.0
|
|
HE22
|
A:GLN188
|
4.4
|
32.8
|
1.0
|
|
HA3
|
A:GLY183
|
4.5
|
31.4
|
1.0
|
|
HB2
|
A:ARG186
|
4.6
|
33.5
|
1.0
|
|
CB
|
A:PHE113
|
4.6
|
31.0
|
1.0
|
|
C
|
A:GLY183
|
4.6
|
31.4
|
1.0
|
|
H
|
A:SER115
|
4.6
|
28.7
|
1.0
|
|
N
|
A:GLY185
|
4.7
|
32.4
|
1.0
|
|
C
|
A:PHE113
|
4.7
|
31.0
|
1.0
|
|
N
|
A:PHE113
|
4.7
|
31.0
|
1.0
|
|
H
|
A:CYS154
|
4.7
|
35.1
|
1.0
|
|
CA
|
A:CYS111
|
4.7
|
31.8
|
1.0
|
|
CA
|
A:GLY183
|
4.7
|
31.4
|
1.0
|
|
C
|
A:CYS184
|
4.8
|
35.0
|
1.0
|
|
H
|
A:LYS116
|
4.9
|
32.9
|
1.0
|
|
HA
|
A:CYS111
|
4.9
|
31.8
|
1.0
|
|
C
|
A:CYS114
|
4.9
|
30.6
|
1.0
|
|
CA
|
A:PHE113
|
4.9
|
31.0
|
1.0
|
|
NE2
|
A:GLN188
|
4.9
|
32.8
|
1.0
|
|
HA
|
A:CYS184
|
4.9
|
35.0
|
1.0
|
|
C
|
A:CYS154
|
4.9
|
35.1
|
1.0
|
|
N
|
A:CYS154
|
4.9
|
35.1
|
1.0
|
|
N
|
A:SER115
|
5.0
|
28.7
|
1.0
|
|
Zinc binding site 3 out
of 10 in 8b3d
Go back to
Zinc Binding Sites List in 8b3d
Zinc binding site 3 out
of 10 in the Structure of the Pol II-Tcr-ELOF1 Complex.
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 3 of Structure of the Pol II-Tcr-ELOF1 Complex. within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Zn1201
b:53.4
occ:1.00
|
SG
|
B:CYS1122
|
2.3
|
16.2
|
1.0
|
|
SG
|
B:CYS1140
|
2.3
|
25.7
|
1.0
|
|
SG
|
B:CYS1119
|
2.3
|
15.9
|
1.0
|
|
SG
|
B:CYS1137
|
2.3
|
20.1
|
1.0
|
|
HB3
|
B:CYS1119
|
2.8
|
15.9
|
1.0
|
|
HB2
|
B:CYS1140
|
2.9
|
25.7
|
1.0
|
|
CB
|
B:CYS1119
|
2.9
|
15.9
|
1.0
|
|
HB2
|
B:CYS1119
|
3.0
|
15.9
|
1.0
|
|
H
|
B:CYS1140
|
3.1
|
25.7
|
1.0
|
|
H
|
B:CYS1122
|
3.1
|
16.2
|
1.0
|
|
CB
|
B:CYS1140
|
3.2
|
25.7
|
1.0
|
|
HB3
|
B:CYS1137
|
3.2
|
20.1
|
1.0
|
|
CB
|
B:CYS1137
|
3.3
|
20.1
|
1.0
|
|
HB3
|
B:CYS1122
|
3.3
|
16.2
|
1.0
|
|
HB2
|
B:CYS1137
|
3.4
|
20.1
|
1.0
|
|
CB
|
B:CYS1122
|
3.4
|
16.2
|
1.0
|
|
N
|
B:CYS1140
|
3.7
|
25.7
|
1.0
|
|
HB2
|
B:LEU1121
|
3.9
|
18.2
|
1.0
|
|
N
|
B:CYS1122
|
3.9
|
16.2
|
1.0
|
|
HB3
|
B:CYS1140
|
3.9
|
25.7
|
1.0
|
|
CA
|
B:CYS1140
|
4.1
|
25.7
|
1.0
|
|
HB2
|
B:CYS1122
|
4.2
|
16.2
|
1.0
|
|
H
|
B:LEU1121
|
4.2
|
18.2
|
1.0
|
|
CA
|
B:CYS1122
|
4.2
|
16.2
|
1.0
|
|
OD1
|
B:ASN1142
|
4.3
|
24.0
|
1.0
|
|
CA
|
B:CYS1119
|
4.4
|
15.9
|
1.0
|
|
HA3
|
B:GLY1139
|
4.5
|
22.1
|
1.0
|
|
H
|
B:ILE1124
|
4.5
|
14.3
|
1.0
|
|
HA
|
B:CYS1140
|
4.6
|
25.7
|
1.0
|
|
HB
|
B:ILE1124
|
4.6
|
14.3
|
1.0
|
|
H
|
B:GLY1123
|
4.7
|
13.2
|
1.0
|
|
CA
|
B:CYS1137
|
4.7
|
20.1
|
1.0
|
|
C
|
B:GLY1139
|
4.7
|
22.1
|
1.0
|
|
CB
|
B:LEU1121
|
4.8
|
18.2
|
1.0
|
|
HA
|
B:CYS1119
|
4.8
|
15.9
|
1.0
|
|
H
|
B:GLY1139
|
4.8
|
22.1
|
1.0
|
|
N
|
B:LEU1121
|
4.9
|
18.2
|
1.0
|
|
C
|
B:CYS1119
|
4.9
|
15.9
|
1.0
|
|
C
|
B:CYS1122
|
4.9
|
16.2
|
1.0
|
|
HD21
|
B:ASN1142
|
4.9
|
24.0
|
1.0
|
|
H
|
B:CYS1119
|
5.0
|
15.9
|
1.0
|
|
C
|
B:LEU1121
|
5.0
|
18.2
|
1.0
|
|
CA
|
B:GLY1139
|
5.0
|
22.1
|
1.0
|
|
Zinc binding site 4 out
of 10 in 8b3d
Go back to
Zinc Binding Sites List in 8b3d
Zinc binding site 4 out
of 10 in the Structure of the Pol II-Tcr-ELOF1 Complex.
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 4 of Structure of the Pol II-Tcr-ELOF1 Complex. within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Zn301
b:48.6
occ:1.00
|
SG
|
C:CYS94
|
2.3
|
10.0
|
1.0
|
|
SG
|
C:CYS88
|
2.3
|
17.5
|
1.0
|
|
SG
|
C:CYS90
|
2.3
|
22.5
|
1.0
|
|
SG
|
C:CYS97
|
2.3
|
8.3
|
1.0
|
|
HB3
|
C:CYS97
|
2.9
|
8.3
|
1.0
|
|
HB3
|
C:CYS88
|
2.9
|
17.5
|
1.0
|
|
CB
|
C:CYS88
|
3.1
|
17.5
|
1.0
|
|
HB3
|
C:CYS90
|
3.2
|
22.5
|
1.0
|
|
HB3
|
C:CYS94
|
3.2
|
10.0
|
1.0
|
|
CB
|
C:CYS97
|
3.2
|
8.3
|
1.0
|
|
CB
|
C:CYS94
|
3.3
|
10.0
|
1.0
|
|
CB
|
C:CYS90
|
3.4
|
22.5
|
1.0
|
|
HB2
|
C:CYS88
|
3.4
|
17.5
|
1.0
|
|
H
|
C:CYS94
|
3.4
|
10.0
|
1.0
|
|
N
|
C:CYS94
|
3.6
|
10.0
|
1.0
|
|
H
|
C:CYS97
|
3.6
|
8.3
|
1.0
|
|
H
|
C:CYS90
|
3.8
|
22.5
|
1.0
|
|
CA
|
C:CYS94
|
3.9
|
10.0
|
1.0
|
|
HB2
|
C:CYS97
|
3.9
|
8.3
|
1.0
|
|
N
|
C:CYS97
|
3.9
|
8.3
|
1.0
|
|
HB2
|
C:GLU96
|
4.0
|
10.3
|
1.0
|
|
HB2
|
C:CYS90
|
4.0
|
22.5
|
1.0
|
|
C
|
C:PHE93
|
4.1
|
15.8
|
1.0
|
|
HB2
|
C:CYS94
|
4.1
|
10.0
|
1.0
|
|
O
|
C:CYS94
|
4.1
|
10.0
|
1.0
|
|
HA
|
C:PHE93
|
4.2
|
15.8
|
1.0
|
|
CA
|
C:CYS97
|
4.2
|
8.3
|
1.0
|
|
H
|
C:GLU96
|
4.3
|
10.3
|
1.0
|
|
C
|
C:CYS94
|
4.3
|
10.0
|
1.0
|
|
HG
|
C:SER85
|
4.4
|
8.4
|
1.0
|
|
N
|
C:CYS90
|
4.5
|
22.5
|
1.0
|
|
CA
|
C:CYS90
|
4.5
|
22.5
|
1.0
|
|
CA
|
C:CYS88
|
4.5
|
17.5
|
1.0
|
|
O
|
C:PHE93
|
4.6
|
15.8
|
1.0
|
|
HA
|
C:SER85
|
4.6
|
8.4
|
1.0
|
|
CA
|
C:PHE93
|
4.7
|
15.8
|
1.0
|
|
C
|
C:GLU96
|
4.7
|
10.3
|
1.0
|
|
O
|
C:GLU91
|
4.8
|
33.2
|
1.0
|
|
HA
|
C:CYS94
|
4.8
|
10.0
|
1.0
|
|
HA
|
C:CYS88
|
4.8
|
17.5
|
1.0
|
|
CB
|
C:GLU96
|
4.8
|
10.3
|
1.0
|
|
N
|
C:GLU96
|
4.9
|
10.3
|
1.0
|
|
C
|
C:CYS88
|
4.9
|
17.5
|
1.0
|
|
HA
|
C:CYS97
|
4.9
|
8.3
|
1.0
|
|
Zinc binding site 5 out
of 10 in 8b3d
Go back to
Zinc Binding Sites List in 8b3d
Zinc binding site 5 out
of 10 in the Structure of the Pol II-Tcr-ELOF1 Complex.
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 5 of Structure of the Pol II-Tcr-ELOF1 Complex. within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Zn201
b:48.0
occ:1.00
|
SG
|
I:CYS42
|
2.3
|
28.2
|
1.0
|
|
SG
|
I:CYS20
|
2.3
|
24.1
|
1.0
|
|
SG
|
I:CYS17
|
2.3
|
22.1
|
1.0
|
|
SG
|
I:CYS39
|
2.3
|
25.5
|
1.0
|
|
HB2
|
I:CYS17
|
2.5
|
22.1
|
1.0
|
|
HB3
|
I:CYS17
|
2.6
|
22.1
|
1.0
|
|
CB
|
I:CYS17
|
2.6
|
22.1
|
1.0
|
|
HB2
|
I:CYS39
|
2.7
|
25.5
|
1.0
|
|
HB3
|
I:CYS39
|
2.7
|
25.5
|
1.0
|
|
CB
|
I:CYS39
|
2.8
|
25.5
|
1.0
|
|
H
|
I:CYS42
|
3.1
|
28.2
|
1.0
|
|
H
|
I:CYS20
|
3.2
|
24.1
|
1.0
|
|
HB3
|
I:CYS42
|
3.6
|
28.2
|
1.0
|
|
CB
|
I:CYS42
|
3.6
|
28.2
|
1.0
|
|
HB3
|
I:TYR44
|
3.6
|
25.2
|
1.0
|
|
HB3
|
I:ASN41
|
3.8
|
26.9
|
1.0
|
|
HB2
|
I:GLU19
|
3.8
|
28.9
|
1.0
|
|
CB
|
I:CYS20
|
3.8
|
24.1
|
1.0
|
|
N
|
I:CYS42
|
3.9
|
28.2
|
1.0
|
|
H
|
I:ASN22
|
3.9
|
19.3
|
1.0
|
|
N
|
I:CYS20
|
4.0
|
24.1
|
1.0
|
|
HB2
|
I:ASN22
|
4.0
|
19.3
|
1.0
|
|
HB3
|
I:CYS20
|
4.0
|
24.1
|
1.0
|
|
H
|
I:GLU19
|
4.1
|
28.9
|
1.0
|
|
CA
|
I:CYS17
|
4.1
|
22.1
|
1.0
|
|
H
|
I:TYR44
|
4.2
|
25.2
|
1.0
|
|
CA
|
I:CYS42
|
4.3
|
28.2
|
1.0
|
|
HB2
|
I:TYR44
|
4.3
|
25.2
|
1.0
|
|
CA
|
I:CYS39
|
4.3
|
25.5
|
1.0
|
|
HB2
|
I:CYS42
|
4.3
|
28.2
|
1.0
|
|
CB
|
I:TYR44
|
4.4
|
25.2
|
1.0
|
|
CA
|
I:CYS20
|
4.4
|
24.1
|
1.0
|
|
HD23
|
I:LEU24
|
4.5
|
23.2
|
1.0
|
|
HA
|
I:CYS17
|
4.5
|
22.1
|
1.0
|
|
HB2
|
I:CYS20
|
4.5
|
24.1
|
1.0
|
|
H
|
I:ASN21
|
4.5
|
20.0
|
1.0
|
|
H
|
I:ASN41
|
4.5
|
26.9
|
1.0
|
|
HD2
|
I:TYR44
|
4.6
|
25.2
|
1.0
|
|
H
|
I:CYS17
|
4.6
|
22.1
|
1.0
|
|
HA
|
I:CYS39
|
4.6
|
25.5
|
1.0
|
|
HD21
|
I:LEU24
|
4.6
|
23.2
|
1.0
|
|
CB
|
I:ASN41
|
4.7
|
26.9
|
1.0
|
|
C
|
I:CYS42
|
4.8
|
28.2
|
1.0
|
|
CB
|
I:GLU19
|
4.8
|
28.9
|
1.0
|
|
N
|
I:ASN22
|
4.8
|
19.3
|
1.0
|
|
O
|
I:ASN22
|
4.8
|
19.3
|
1.0
|
|
C
|
I:CYS17
|
4.8
|
22.1
|
1.0
|
|
N
|
I:GLU19
|
4.8
|
28.9
|
1.0
|
|
N
|
I:ASN21
|
4.9
|
20.0
|
1.0
|
|
N
|
I:CYS17
|
4.9
|
22.1
|
1.0
|
|
CB
|
I:ASN22
|
4.9
|
19.3
|
1.0
|
|
C
|
I:CYS20
|
4.9
|
24.1
|
1.0
|
|
H
|
I:CYS39
|
4.9
|
25.5
|
1.0
|
|
C
|
I:CYS39
|
5.0
|
25.5
|
1.0
|
|
Zinc binding site 6 out
of 10 in 8b3d
Go back to
Zinc Binding Sites List in 8b3d
Zinc binding site 6 out
of 10 in the Structure of the Pol II-Tcr-ELOF1 Complex.
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 6 of Structure of the Pol II-Tcr-ELOF1 Complex. within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Zn202
b:49.7
occ:1.00
|
SG
|
I:CYS89
|
2.3
|
33.0
|
1.0
|
|
SG
|
I:CYS119
|
2.3
|
27.5
|
1.0
|
|
SG
|
I:CYS114
|
2.3
|
24.2
|
1.0
|
|
SG
|
I:CYS86
|
2.3
|
30.3
|
1.0
|
|
HB2
|
I:CYS114
|
2.7
|
24.2
|
1.0
|
|
CB
|
I:CYS114
|
2.8
|
24.2
|
1.0
|
|
HB3
|
I:CYS114
|
2.8
|
24.2
|
1.0
|
|
HB3
|
I:CYS86
|
3.1
|
30.3
|
1.0
|
|
CB
|
I:CYS86
|
3.1
|
30.3
|
1.0
|
|
HB2
|
I:CYS86
|
3.1
|
30.3
|
1.0
|
|
HB3
|
I:LYS88
|
3.2
|
32.4
|
1.0
|
|
HB3
|
I:HIS121
|
3.3
|
27.7
|
1.0
|
|
HB3
|
I:CYS89
|
3.4
|
33.0
|
1.0
|
|
H
|
I:CYS89
|
3.4
|
33.0
|
1.0
|
|
HB3
|
I:CYS119
|
3.4
|
27.5
|
1.0
|
|
CB
|
I:CYS119
|
3.5
|
27.5
|
1.0
|
|
CB
|
I:CYS89
|
3.5
|
33.0
|
1.0
|
|
H
|
I:HIS121
|
3.6
|
27.7
|
1.0
|
|
HB3
|
I:ALA116
|
3.8
|
25.7
|
1.0
|
|
HB2
|
I:CYS119
|
3.8
|
27.5
|
1.0
|
|
HB2
|
I:HIS121
|
3.9
|
27.7
|
1.0
|
|
N
|
I:CYS89
|
4.0
|
33.0
|
1.0
|
|
HB3
|
I:HIS91
|
4.0
|
30.6
|
1.0
|
|
CB
|
I:HIS121
|
4.0
|
27.7
|
1.0
|
|
H
|
I:HIS91
|
4.1
|
30.6
|
1.0
|
|
HB2
|
I:HIS91
|
4.1
|
30.6
|
1.0
|
|
CB
|
I:LYS88
|
4.2
|
32.4
|
1.0
|
|
HB2
|
I:CYS89
|
4.2
|
33.0
|
1.0
|
|
HG2
|
I:LYS88
|
4.3
|
32.4
|
1.0
|
|
CA
|
I:CYS114
|
4.3
|
24.2
|
1.0
|
|
CA
|
I:CYS89
|
4.3
|
33.0
|
1.0
|
|
N
|
I:HIS121
|
4.4
|
27.7
|
1.0
|
|
HB2
|
I:LYS88
|
4.5
|
32.4
|
1.0
|
|
CB
|
I:HIS91
|
4.5
|
30.6
|
1.0
|
|
HB2
|
I:ALA116
|
4.5
|
25.7
|
1.0
|
|
H
|
I:ALA116
|
4.5
|
25.7
|
1.0
|
|
HZ3
|
I:TRP123
|
4.6
|
23.0
|
1.0
|
|
CA
|
I:CYS86
|
4.6
|
30.3
|
1.0
|
|
CB
|
I:ALA116
|
4.6
|
25.7
|
1.0
|
|
H
|
I:GLY120
|
4.6
|
23.3
|
1.0
|
|
HA
|
I:CYS114
|
4.6
|
24.2
|
1.0
|
|
H
|
I:GLY90
|
4.7
|
30.2
|
1.0
|
|
CG
|
I:LYS88
|
4.8
|
32.4
|
1.0
|
|
CA
|
I:CYS119
|
4.8
|
27.5
|
1.0
|
|
N
|
I:GLY120
|
4.8
|
23.3
|
1.0
|
|
CA
|
I:HIS121
|
4.8
|
27.7
|
1.0
|
|
N
|
I:HIS91
|
4.9
|
30.6
|
1.0
|
|
HD2
|
I:HIS121
|
4.9
|
27.7
|
1.0
|
|
HA
|
I:CYS86
|
4.9
|
30.3
|
1.0
|
|
H
|
I:CYS114
|
4.9
|
24.2
|
1.0
|
|
C
|
I:CYS119
|
4.9
|
27.5
|
1.0
|
|
H
|
I:LYS88
|
5.0
|
32.4
|
1.0
|
|
C
|
I:LYS88
|
5.0
|
32.4
|
1.0
|
|
C
|
I:CYS89
|
5.0
|
33.0
|
1.0
|
|
C
|
I:CYS114
|
5.0
|
24.2
|
1.0
|
|
Zinc binding site 7 out
of 10 in 8b3d
Go back to
Zinc Binding Sites List in 8b3d
Zinc binding site 7 out
of 10 in the Structure of the Pol II-Tcr-ELOF1 Complex.
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 7 of Structure of the Pol II-Tcr-ELOF1 Complex. within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Zn101
b:15.3
occ:1.00
|
SG
|
J:CYS10
|
2.3
|
5.3
|
1.0
|
|
SG
|
J:CYS45
|
2.3
|
1.3
|
1.0
|
|
SG
|
J:CYS7
|
2.3
|
5.7
|
1.0
|
|
SG
|
J:CYS44
|
2.3
|
3.0
|
1.0
|
|
HB3
|
J:CYS7
|
2.9
|
5.7
|
1.0
|
|
H
|
J:CYS10
|
3.0
|
5.3
|
1.0
|
|
CB
|
J:CYS7
|
3.1
|
5.7
|
1.0
|
|
HB2
|
J:CYS7
|
3.2
|
5.7
|
1.0
|
|
H
|
J:CYS45
|
3.2
|
1.3
|
1.0
|
|
HB2
|
J:CYS44
|
3.3
|
3.0
|
1.0
|
|
N
|
J:CYS45
|
3.3
|
1.3
|
1.0
|
|
HB3
|
J:CYS10
|
3.4
|
5.3
|
1.0
|
|
HE
|
J:ARG42
|
3.4
|
10.4
|
1.0
|
|
CB
|
J:CYS44
|
3.4
|
3.0
|
1.0
|
|
CB
|
J:CYS10
|
3.5
|
5.3
|
1.0
|
|
HB
|
J:THR9
|
3.6
|
8.1
|
1.0
|
|
CB
|
J:CYS45
|
3.7
|
1.3
|
1.0
|
|
HA
|
J:CYS45
|
3.7
|
1.3
|
1.0
|
|
CA
|
J:CYS45
|
3.8
|
1.3
|
1.0
|
|
N
|
J:CYS10
|
3.8
|
5.3
|
1.0
|
|
C
|
J:CYS44
|
3.8
|
3.0
|
1.0
|
|
HB3
|
J:LYS12
|
4.0
|
2.4
|
1.0
|
|
HB2
|
J:ARG42
|
4.1
|
10.4
|
1.0
|
|
HH21
|
J:ARG42
|
4.1
|
10.4
|
1.0
|
|
H
|
J:LYS12
|
4.1
|
2.4
|
1.0
|
|
HB3
|
J:CYS45
|
4.2
|
1.3
|
1.0
|
|
HB3
|
J:CYS44
|
4.2
|
3.0
|
1.0
|
|
CA
|
J:CYS44
|
4.2
|
3.0
|
1.0
|
|
NE
|
J:ARG42
|
4.2
|
10.4
|
1.0
|
|
CA
|
J:CYS10
|
4.2
|
5.3
|
1.0
|
|
HB2
|
J:CYS10
|
4.3
|
5.3
|
1.0
|
|
HB2
|
J:CYS45
|
4.3
|
1.3
|
1.0
|
|
H
|
J:THR9
|
4.4
|
8.1
|
1.0
|
|
H
|
J:GLY11
|
4.4
|
2.9
|
1.0
|
|
HB2
|
J:LYS12
|
4.4
|
2.4
|
1.0
|
|
CB
|
J:THR9
|
4.5
|
8.1
|
1.0
|
|
CA
|
J:CYS7
|
4.5
|
5.7
|
1.0
|
|
HB3
|
J:ARG42
|
4.5
|
10.4
|
1.0
|
|
O
|
J:CYS44
|
4.5
|
3.0
|
1.0
|
|
CB
|
J:LYS12
|
4.6
|
2.4
|
1.0
|
|
H
|
J:CYS44
|
4.7
|
3.0
|
1.0
|
|
HD2
|
J:ARG42
|
4.7
|
10.4
|
1.0
|
|
HH21
|
J:ARG47
|
4.7
|
5.1
|
1.0
|
|
HG22
|
J:THR9
|
4.7
|
8.1
|
1.0
|
|
CB
|
J:ARG42
|
4.8
|
10.4
|
1.0
|
|
NH2
|
J:ARG42
|
4.8
|
10.4
|
1.0
|
|
N
|
J:GLY11
|
4.9
|
2.9
|
1.0
|
|
N
|
J:CYS44
|
4.9
|
3.0
|
1.0
|
|
C
|
J:THR9
|
4.9
|
8.1
|
1.0
|
|
HD3
|
J:LYS12
|
4.9
|
2.4
|
1.0
|
|
HA
|
J:CYS7
|
4.9
|
5.7
|
1.0
|
|
N
|
J:LYS12
|
4.9
|
2.4
|
1.0
|
|
HG3
|
J:MET48
|
4.9
|
5.8
|
1.0
|
|
N
|
J:THR9
|
5.0
|
8.1
|
1.0
|
|
CZ
|
J:ARG42
|
5.0
|
10.4
|
1.0
|
|
C
|
J:CYS10
|
5.0
|
5.3
|
1.0
|
|
HA
|
J:CYS44
|
5.0
|
3.0
|
1.0
|
|
CD
|
J:ARG42
|
5.0
|
10.4
|
1.0
|
|
Zinc binding site 8 out
of 10 in 8b3d
Go back to
Zinc Binding Sites List in 8b3d
Zinc binding site 8 out
of 10 in the Structure of the Pol II-Tcr-ELOF1 Complex.
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 8 of Structure of the Pol II-Tcr-ELOF1 Complex. within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
L:Zn101
b:56.3
occ:1.00
|
SG
|
L:CYS22
|
2.3
|
22.2
|
1.0
|
|
SG
|
L:CYS19
|
2.3
|
19.4
|
1.0
|
|
SG
|
L:CYS36
|
2.3
|
24.0
|
1.0
|
|
SG
|
L:CYS39
|
2.3
|
24.6
|
1.0
|
|
HB3
|
L:CYS36
|
2.8
|
24.0
|
1.0
|
|
HB2
|
L:CYS19
|
2.8
|
19.4
|
1.0
|
|
CB
|
L:CYS19
|
3.0
|
19.4
|
1.0
|
|
CB
|
L:CYS36
|
3.0
|
24.0
|
1.0
|
|
HB3
|
L:CYS22
|
3.0
|
22.2
|
1.0
|
|
H
|
L:CYS22
|
3.1
|
22.2
|
1.0
|
|
HB3
|
L:CYS19
|
3.1
|
19.4
|
1.0
|
|
HB2
|
L:CYS36
|
3.2
|
24.0
|
1.0
|
|
H
|
L:CYS39
|
3.2
|
24.6
|
1.0
|
|
CB
|
L:CYS22
|
3.3
|
22.2
|
1.0
|
|
HB2
|
L:GLU38
|
3.4
|
28.4
|
1.0
|
|
HB3
|
L:GLU21
|
3.6
|
20.7
|
1.0
|
|
CB
|
L:CYS39
|
3.7
|
24.6
|
1.0
|
|
HB3
|
L:TYR41
|
3.7
|
17.6
|
1.0
|
|
HB3
|
L:GLU38
|
3.8
|
28.4
|
1.0
|
|
N
|
L:CYS22
|
3.8
|
22.2
|
1.0
|
|
HB3
|
L:CYS39
|
3.8
|
24.6
|
1.0
|
|
N
|
L:CYS39
|
3.8
|
24.6
|
1.0
|
|
H
|
L:TYR41
|
3.9
|
17.6
|
1.0
|
|
HB2
|
L:TYR41
|
3.9
|
17.6
|
1.0
|
|
HG1
|
L:THR24
|
3.9
|
25.2
|
1.0
|
|
HB2
|
L:CYS22
|
4.0
|
22.2
|
1.0
|
|
HB
|
L:THR24
|
4.1
|
25.2
|
1.0
|
|
CA
|
L:CYS22
|
4.1
|
22.2
|
1.0
|
|
CB
|
L:GLU38
|
4.1
|
28.4
|
1.0
|
|
CB
|
L:TYR41
|
4.3
|
17.6
|
1.0
|
|
CA
|
L:CYS39
|
4.3
|
24.6
|
1.0
|
|
H
|
L:THR24
|
4.4
|
25.2
|
1.0
|
|
H
|
L:GLU21
|
4.4
|
20.7
|
1.0
|
|
CA
|
L:CYS36
|
4.4
|
24.0
|
1.0
|
|
CA
|
L:CYS19
|
4.4
|
19.4
|
1.0
|
|
OG1
|
L:THR24
|
4.4
|
25.2
|
1.0
|
|
HB2
|
L:CYS39
|
4.5
|
24.6
|
1.0
|
|
H
|
L:HIS23
|
4.5
|
23.0
|
1.0
|
|
H
|
L:GLY40
|
4.5
|
24.7
|
1.0
|
|
CB
|
L:GLU21
|
4.6
|
20.7
|
1.0
|
|
HA
|
L:CYS19
|
4.7
|
19.4
|
1.0
|
|
N
|
L:TYR41
|
4.7
|
17.6
|
1.0
|
|
C
|
L:CYS22
|
4.7
|
22.2
|
1.0
|
|
C
|
L:CYS36
|
4.7
|
24.0
|
1.0
|
|
CB
|
L:THR24
|
4.7
|
25.2
|
1.0
|
|
HD21
|
L:ASN26
|
4.8
|
23.4
|
1.0
|
|
C
|
L:GLU38
|
4.8
|
28.4
|
1.0
|
|
C
|
L:CYS39
|
4.8
|
24.6
|
1.0
|
|
H
|
L:GLU38
|
4.8
|
28.4
|
1.0
|
|
N
|
L:HIS23
|
4.8
|
23.0
|
1.0
|
|
N
|
L:GLY40
|
4.8
|
24.7
|
1.0
|
|
CA
|
L:GLU38
|
4.8
|
28.4
|
1.0
|
|
HA
|
L:CYS36
|
4.9
|
24.0
|
1.0
|
|
HA
|
L:CYS22
|
4.9
|
22.2
|
1.0
|
|
HG3
|
L:GLU38
|
4.9
|
28.4
|
1.0
|
|
C
|
L:GLU21
|
4.9
|
20.7
|
1.0
|
|
Zinc binding site 9 out
of 10 in 8b3d
Go back to
Zinc Binding Sites List in 8b3d
Zinc binding site 9 out
of 10 in the Structure of the Pol II-Tcr-ELOF1 Complex.
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 9 of Structure of the Pol II-Tcr-ELOF1 Complex. within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
M:Zn1001
b:51.1
occ:1.00
|
SG
|
M:CYS50
|
2.3
|
33.1
|
1.0
|
|
SG
|
M:CYS29
|
2.3
|
31.1
|
1.0
|
|
SG
|
M:CYS26
|
2.3
|
34.2
|
1.0
|
|
SG
|
M:CYS53
|
2.3
|
32.9
|
1.0
|
|
HB3
|
M:CYS26
|
2.9
|
34.2
|
1.0
|
|
HB2
|
M:CYS50
|
2.9
|
33.1
|
1.0
|
|
CB
|
M:CYS26
|
3.0
|
34.2
|
1.0
|
|
HB3
|
M:CYS50
|
3.0
|
33.1
|
1.0
|
|
CB
|
M:CYS50
|
3.0
|
33.1
|
1.0
|
|
HB2
|
M:CYS26
|
3.0
|
34.2
|
1.0
|
|
H
|
M:CYS53
|
3.0
|
32.9
|
1.0
|
|
H
|
M:CYS29
|
3.2
|
31.1
|
1.0
|
|
HB3
|
M:CYS53
|
3.2
|
32.9
|
1.0
|
|
HB3
|
M:CYS29
|
3.3
|
31.1
|
1.0
|
|
CB
|
M:CYS53
|
3.4
|
32.9
|
1.0
|
|
CB
|
M:CYS29
|
3.4
|
31.1
|
1.0
|
|
HB2
|
M:PHE28
|
3.6
|
31.9
|
1.0
|
|
N
|
M:CYS53
|
3.8
|
32.9
|
1.0
|
|
N
|
M:CYS29
|
3.8
|
31.1
|
1.0
|
|
HB
|
M:VAL52
|
3.9
|
31.2
|
1.0
|
|
HB2
|
M:GLU55
|
4.0
|
35.4
|
1.0
|
|
HG
|
M:SER34
|
4.0
|
30.5
|
1.0
|
|
CA
|
M:CYS53
|
4.1
|
32.9
|
1.0
|
|
HB2
|
M:CYS53
|
4.1
|
32.9
|
1.0
|
|
HB2
|
M:CYS29
|
4.2
|
31.1
|
1.0
|
|
CA
|
M:CYS29
|
4.2
|
31.1
|
1.0
|
|
H
|
M:GLU55
|
4.3
|
35.4
|
1.0
|
|
H
|
M:PHE28
|
4.3
|
31.9
|
1.0
|
|
H
|
M:VAL52
|
4.4
|
31.2
|
1.0
|
|
CA
|
M:CYS50
|
4.5
|
33.1
|
1.0
|
|
CA
|
M:CYS26
|
4.5
|
34.2
|
1.0
|
|
CB
|
M:PHE28
|
4.5
|
31.9
|
1.0
|
|
HB2
|
M:HIS31
|
4.6
|
33.0
|
1.0
|
|
HH2
|
M:TRP74
|
4.6
|
33.7
|
1.0
|
|
OG
|
M:SER34
|
4.6
|
30.5
|
1.0
|
|
H
|
M:LEU54
|
4.7
|
33.5
|
1.0
|
|
C
|
M:CYS53
|
4.7
|
32.9
|
1.0
|
|
H
|
M:HIS31
|
4.7
|
33.0
|
1.0
|
|
C
|
M:PHE28
|
4.8
|
31.9
|
1.0
|
|
HA
|
M:CYS50
|
4.8
|
33.1
|
1.0
|
|
HB3
|
M:PHE28
|
4.8
|
31.9
|
1.0
|
|
HA
|
M:CYS26
|
4.8
|
34.2
|
1.0
|
|
CB
|
M:VAL52
|
4.8
|
31.2
|
1.0
|
|
H
|
M:ASN30
|
4.8
|
30.2
|
1.0
|
|
CB
|
M:GLU55
|
4.9
|
35.4
|
1.0
|
|
HD2
|
M:PHE28
|
4.9
|
31.9
|
1.0
|
|
N
|
M:PHE28
|
4.9
|
31.9
|
1.0
|
|
N
|
M:LEU54
|
4.9
|
33.5
|
1.0
|
|
C
|
M:VAL52
|
4.9
|
31.2
|
1.0
|
|
HA
|
M:CYS53
|
5.0
|
32.9
|
1.0
|
|
C
|
M:CYS29
|
5.0
|
31.1
|
1.0
|
|
HA
|
M:CYS29
|
5.0
|
31.1
|
1.0
|
|
CA
|
M:PHE28
|
5.0
|
31.9
|
1.0
|
|
Zinc binding site 10 out
of 10 in 8b3d
Go back to
Zinc Binding Sites List in 8b3d
Zinc binding site 10 out
of 10 in the Structure of the Pol II-Tcr-ELOF1 Complex.
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 10 of Structure of the Pol II-Tcr-ELOF1 Complex. within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
c:Zn1001
b:57.6
occ:1.00
|
ND1
|
c:HIS588
|
2.1
|
43.1
|
1.0
|
|
SG
|
c:CYS567
|
2.3
|
44.8
|
1.0
|
|
SG
|
c:CYS577
|
2.3
|
43.6
|
1.0
|
|
SG
|
c:CYS585
|
2.3
|
44.0
|
1.0
|
|
HE1
|
c:HIS588
|
2.6
|
43.1
|
1.0
|
|
CE1
|
c:HIS588
|
2.6
|
43.1
|
1.0
|
|
HB3
|
c:CYS567
|
2.9
|
44.8
|
1.0
|
|
HB3
|
c:CYS577
|
3.0
|
43.6
|
1.0
|
|
CB
|
c:CYS577
|
3.0
|
43.6
|
1.0
|
|
CB
|
c:CYS567
|
3.1
|
44.8
|
1.0
|
|
HB2
|
c:CYS577
|
3.1
|
43.6
|
1.0
|
|
HB2
|
c:CYS567
|
3.2
|
44.8
|
1.0
|
|
CG
|
c:HIS588
|
3.3
|
43.1
|
1.0
|
|
HB2
|
c:CYS585
|
3.4
|
44.0
|
1.0
|
|
CB
|
c:CYS585
|
3.4
|
44.0
|
1.0
|
|
HB3
|
c:CYS585
|
3.5
|
44.0
|
1.0
|
|
HB2
|
c:PHE587
|
3.5
|
45.7
|
1.0
|
|
HB3
|
c:ALA569
|
3.5
|
42.1
|
1.0
|
|
HB2
|
c:HIS588
|
3.5
|
43.1
|
1.0
|
|
NE2
|
c:HIS588
|
3.9
|
43.1
|
1.0
|
|
HB3
|
c:ARG579
|
4.0
|
43.6
|
1.0
|
|
H
|
c:HIS588
|
4.0
|
43.1
|
1.0
|
|
CB
|
c:HIS588
|
4.0
|
43.1
|
1.0
|
|
H
|
c:ALA569
|
4.1
|
42.1
|
1.0
|
|
HD2
|
c:PHE587
|
4.2
|
45.7
|
1.0
|
|
HB2
|
c:ALA569
|
4.2
|
42.1
|
1.0
|
|
CD2
|
c:HIS588
|
4.2
|
43.1
|
1.0
|
|
CB
|
c:ALA569
|
4.3
|
42.1
|
1.0
|
|
CB
|
c:PHE587
|
4.5
|
45.7
|
1.0
|
|
N
|
c:HIS588
|
4.5
|
43.1
|
1.0
|
|
CA
|
c:CYS567
|
4.5
|
44.8
|
1.0
|
|
HB2
|
c:ARG579
|
4.5
|
43.6
|
1.0
|
|
CA
|
c:CYS577
|
4.5
|
43.6
|
1.0
|
|
H
|
c:ARG579
|
4.5
|
43.6
|
1.0
|
|
HE2
|
c:HIS588
|
4.6
|
43.1
|
1.0
|
|
H
|
c:PHE587
|
4.6
|
45.7
|
1.0
|
|
HB3
|
c:PHE587
|
4.7
|
45.7
|
1.0
|
|
HB3
|
c:HIS588
|
4.7
|
43.1
|
1.0
|
|
CB
|
c:ARG579
|
4.7
|
43.6
|
1.0
|
|
CA
|
c:CYS585
|
4.8
|
44.0
|
1.0
|
|
HA
|
c:CYS577
|
4.9
|
43.6
|
1.0
|
|
N
|
c:ALA569
|
4.9
|
42.1
|
1.0
|
|
CD2
|
c:PHE587
|
4.9
|
45.7
|
1.0
|
|
CA
|
c:HIS588
|
4.9
|
43.1
|
1.0
|
|
HA
|
c:CYS567
|
4.9
|
44.8
|
1.0
|
|
C
|
c:CYS567
|
4.9
|
44.8
|
1.0
|
|
HB1
|
c:ALA569
|
4.9
|
42.1
|
1.0
|
|
HA
|
c:CYS585
|
5.0
|
44.0
|
1.0
|
|
Reference:
G.Kokic,
P.Cramer.
Structure of the Pol II-Tcr-ELOF1 Complex. To Be Published.
Page generated: Thu Dec 28 12:50:22 2023
|
