Zinc in PDB 7uhn: Time-Resolved Structure of Metallo Beta-Lactamase L1 in A Complex with Cleaved Moxalactam (300 Ms Snapshot)

Enzymatic activity of Time-Resolved Structure of Metallo Beta-Lactamase L1 in A Complex with Cleaved Moxalactam (300 Ms Snapshot)

All present enzymatic activity of Time-Resolved Structure of Metallo Beta-Lactamase L1 in A Complex with Cleaved Moxalactam (300 Ms Snapshot):
3.5.2.6;

Protein crystallography data

The structure of Time-Resolved Structure of Metallo Beta-Lactamase L1 in A Complex with Cleaved Moxalactam (300 Ms Snapshot), PDB code: 7uhn was solved by M.Wilamowski, Y.Kim, D.A.Sherrell, A.Lavens, R.Henning, N.Maltseva, M.Endres, G.Babnigg, V.Srajer, A.Joachimiak, Center For Structuralgenomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.03 / 2.20
Space group P 64 2 2
Cell size a, b, c (Å), α, β, γ (°) 105.853, 105.853, 99.1, 90, 90, 120
R / Rfree (%) 19.9 / 24.6

Zinc Binding Sites:

The binding sites of Zinc atom in the Time-Resolved Structure of Metallo Beta-Lactamase L1 in A Complex with Cleaved Moxalactam (300 Ms Snapshot) (pdb code 7uhn). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Time-Resolved Structure of Metallo Beta-Lactamase L1 in A Complex with Cleaved Moxalactam (300 Ms Snapshot), PDB code: 7uhn:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 7uhn

Go back to Zinc Binding Sites List in 7uhn
Zinc binding site 1 out of 2 in the Time-Resolved Structure of Metallo Beta-Lactamase L1 in A Complex with Cleaved Moxalactam (300 Ms Snapshot)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Time-Resolved Structure of Metallo Beta-Lactamase L1 in A Complex with Cleaved Moxalactam (300 Ms Snapshot) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn301

b:21.4
occ:0.60
ND1 A:HIS107 2.2 14.8 1.0
O10 A:XQP303 2.3 32.6 0.7
NE2 A:HIS105 2.5 14.7 1.0
NE2 A:HIS181 2.6 18.0 1.0
CG A:HIS107 3.1 11.0 1.0
ZN A:ZN302 3.2 23.4 0.5
CD2 A:HIS105 3.3 11.9 1.0
CE1 A:HIS107 3.3 9.3 1.0
CB A:HIS107 3.3 9.2 1.0
CD2 A:HIS181 3.3 12.1 1.0
C1 A:XQP303 3.4 34.5 0.7
CE1 A:HIS105 3.6 12.9 1.0
O3 A:XQP303 3.6 30.7 0.7
N1 A:XQP303 3.7 31.8 0.7
OD1 A:ASP109 3.7 16.9 1.0
CE1 A:HIS181 3.7 19.2 1.0
C7 A:XQP303 3.9 29.9 0.7
C6 A:XQP303 3.9 34.6 0.7
C5 A:XQP303 4.1 32.1 0.7
O8 A:XQP303 4.2 30.8 0.7
OD2 A:ASP109 4.2 20.1 1.0
CD2 A:HIS110 4.2 14.2 1.0
CD2 A:HIS107 4.3 9.8 1.0
CG A:ASP109 4.3 15.7 1.0
NE2 A:HIS110 4.3 20.3 1.0
NE2 A:HIS107 4.3 9.0 1.0
O1 A:XQP303 4.5 36.8 0.7
CG A:HIS105 4.5 8.0 1.0
CG A:HIS181 4.6 10.1 1.0
ND1 A:HIS105 4.6 10.5 1.0
ND1 A:HIS181 4.7 16.6 1.0
C2 A:XQP303 4.8 31.7 0.7
CA A:HIS107 4.8 9.0 1.0
C20 A:XQP303 4.9 31.2 0.7

Zinc binding site 2 out of 2 in 7uhn

Go back to Zinc Binding Sites List in 7uhn
Zinc binding site 2 out of 2 in the Time-Resolved Structure of Metallo Beta-Lactamase L1 in A Complex with Cleaved Moxalactam (300 Ms Snapshot)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Time-Resolved Structure of Metallo Beta-Lactamase L1 in A Complex with Cleaved Moxalactam (300 Ms Snapshot) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn302

b:23.4
occ:0.52
OD2 A:ASP109 2.1 20.1 1.0
N1 A:XQP303 2.3 31.8 0.7
NE2 A:HIS110 2.3 20.3 1.0
NE2 A:HIS246 2.6 18.8 1.0
C5 A:XQP303 2.9 32.1 0.7
C2 A:XQP303 3.0 31.7 0.7
CG A:ASP109 3.1 15.7 1.0
CD2 A:HIS110 3.2 14.2 1.0
ZN A:ZN301 3.2 21.4 0.6
CD2 A:HIS246 3.2 20.4 1.0
CE1 A:HIS110 3.3 16.6 1.0
C20 A:XQP303 3.4 31.2 0.7
O8 A:XQP303 3.5 30.8 0.7
OD1 A:ASP109 3.5 16.9 1.0
CE1 A:HIS246 3.8 23.7 1.0
O10 A:XQP303 3.8 32.6 0.7
C6 A:XQP303 3.9 34.6 0.7
O2 A:XQP303 3.9 34.9 0.7
NE2 A:HIS105 4.1 14.7 1.0
C3 A:XQP303 4.1 34.9 0.7
O3 A:XQP303 4.1 30.7 0.7
O9 A:XQP303 4.1 31.2 0.7
C1 A:XQP303 4.2 34.5 0.7
CE1 A:HIS105 4.3 12.9 1.0
CG A:HIS110 4.4 15.1 1.0
ND1 A:HIS110 4.4 14.6 1.0
CB A:ASP109 4.5 14.2 1.0
NE2 A:HIS181 4.5 18.0 1.0
CG A:HIS246 4.5 16.6 1.0
C4 A:XQP303 4.6 37.5 0.7
ND1 A:HIS246 4.8 17.9 1.0

Reference:

M.Wilamowski, Y.Kim, D.A.Sherrell, A.Lavens, R.Henning, N.Maltseva, M.Endres, G.Babnigg, V.Srajer, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases(Csgid). Time-Resolved Structure of Metallo Beta-Lactamase L1 in A Complex with Cleaved Moxalactam (300 Ms Snapshot) To Be Published.
Page generated: Sat Apr 8 04:17:07 2023

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