Zinc in PDB 7uhl: Time-Resolved Structure of Metallo Beta-Lactamase L1 in A Complex with Non-Hydrolyzed Moxalactam (100 Ms Snapshot)

Enzymatic activity of Time-Resolved Structure of Metallo Beta-Lactamase L1 in A Complex with Non-Hydrolyzed Moxalactam (100 Ms Snapshot)

All present enzymatic activity of Time-Resolved Structure of Metallo Beta-Lactamase L1 in A Complex with Non-Hydrolyzed Moxalactam (100 Ms Snapshot):
3.5.2.6;

Protein crystallography data

The structure of Time-Resolved Structure of Metallo Beta-Lactamase L1 in A Complex with Non-Hydrolyzed Moxalactam (100 Ms Snapshot), PDB code: 7uhl was solved by M.Wilamowski, Y.Kim, D.A.Sherrell, A.Lavens, R.Henning, N.Maltseva, M.Endres, G.Babnigg, V.Srajer, A.Joachimiak, Center For Structuralgenomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.08 / 2.20
Space group P 64 2 2
Cell size a, b, c (Å), α, β, γ (°) 105.853, 105.853, 99.1, 90, 90, 120
R / Rfree (%) 20.2 / 24.5

Zinc Binding Sites:

The binding sites of Zinc atom in the Time-Resolved Structure of Metallo Beta-Lactamase L1 in A Complex with Non-Hydrolyzed Moxalactam (100 Ms Snapshot) (pdb code 7uhl). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Time-Resolved Structure of Metallo Beta-Lactamase L1 in A Complex with Non-Hydrolyzed Moxalactam (100 Ms Snapshot), PDB code: 7uhl:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 7uhl

Go back to Zinc Binding Sites List in 7uhl
Zinc binding site 1 out of 2 in the Time-Resolved Structure of Metallo Beta-Lactamase L1 in A Complex with Non-Hydrolyzed Moxalactam (100 Ms Snapshot)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Time-Resolved Structure of Metallo Beta-Lactamase L1 in A Complex with Non-Hydrolyzed Moxalactam (100 Ms Snapshot) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn301

b:13.9
occ:0.48
ND1 A:HIS107 2.2 13.3 1.0
NE2 A:HIS105 2.3 12.2 1.0
O1 A:MX0303 2.5 17.6 0.7
NE2 A:HIS181 2.6 17.6 1.0
C1 A:MX0303 2.9 19.2 0.7
O7 A:MX0303 3.0 20.8 0.7
CD2 A:HIS181 3.1 14.1 1.0
CD2 A:HIS105 3.1 8.6 1.0
CG A:HIS107 3.2 10.9 1.0
ZN A:ZN302 3.2 19.5 0.7
CE1 A:HIS107 3.2 7.9 1.0
CE1 A:HIS105 3.4 11.9 1.0
CB A:HIS107 3.4 10.3 1.0
N1 A:MX0303 3.4 19.0 0.7
OD1 A:ASP109 3.8 15.6 1.0
CD2 A:HIS110 3.8 13.1 1.0
NE2 A:HIS110 3.8 13.8 1.0
CE1 A:HIS181 3.9 14.3 1.0
O3 A:MX0303 3.9 22.9 0.7
C13 A:MX0303 3.9 18.7 0.7
C6 A:MX0303 4.0 20.4 0.7
C7 A:MX0303 4.0 21.3 0.7
C2 A:MX0303 4.1 18.0 0.7
C5 A:MX0303 4.3 21.1 0.7
CD2 A:HIS107 4.3 9.8 1.0
NE2 A:HIS107 4.3 7.9 1.0
CG A:HIS105 4.3 8.2 1.0
OD2 A:ASP109 4.4 16.0 1.0
ND1 A:HIS105 4.4 11.8 1.0
CG A:HIS181 4.4 9.5 1.0
CG A:ASP109 4.5 16.2 1.0
ND1 A:HIS181 4.8 13.5 1.0
CA A:HIS107 4.9 9.3 1.0

Zinc binding site 2 out of 2 in 7uhl

Go back to Zinc Binding Sites List in 7uhl
Zinc binding site 2 out of 2 in the Time-Resolved Structure of Metallo Beta-Lactamase L1 in A Complex with Non-Hydrolyzed Moxalactam (100 Ms Snapshot)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Time-Resolved Structure of Metallo Beta-Lactamase L1 in A Complex with Non-Hydrolyzed Moxalactam (100 Ms Snapshot) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn302

b:19.5
occ:0.73
NE2 A:HIS110 2.1 13.8 1.0
O7 A:MX0303 2.3 20.8 0.7
OD2 A:ASP109 2.4 16.0 1.0
NE2 A:HIS246 2.4 17.6 1.0
N1 A:MX0303 2.5 19.0 0.7
C2 A:MX0303 2.8 18.0 0.7
C13 A:MX0303 2.8 18.7 0.7
CE1 A:HIS110 3.0 15.9 1.0
C5 A:MX0303 3.0 21.1 0.7
ZN A:ZN301 3.2 13.9 0.5
CD2 A:HIS110 3.2 13.1 1.0
CD2 A:HIS246 3.2 17.1 1.0
CG A:ASP109 3.3 16.2 1.0
C1 A:MX0303 3.4 19.2 0.7
CE1 A:HIS246 3.5 18.5 1.0
OD1 A:ASP109 3.6 15.6 1.0
C3 A:MX0303 3.8 18.7 0.7
O8 A:MX0303 3.8 19.5 0.7
C6 A:MX0303 4.0 20.4 0.7
O2 A:MX0303 4.0 23.2 0.7
O1 A:MX0303 4.0 17.6 0.7
NE2 A:HIS105 4.1 12.2 1.0
ND1 A:HIS110 4.2 11.7 1.0
O3 A:MX0303 4.2 22.9 0.7
CE1 A:HIS105 4.2 11.9 1.0
CG A:HIS110 4.3 12.2 1.0
NE2 A:HIS181 4.4 17.6 1.0
CG A:HIS246 4.5 17.3 1.0
C4 A:MX0303 4.5 18.1 0.7
ND1 A:HIS246 4.5 16.6 1.0
CB A:ASP109 4.7 9.5 1.0
C12 A:MX0303 4.8 17.5 0.7

Reference:

M.Wilamowski, Y.Kim, D.A.Sherrell, A.Lavens, R.Henning, N.Maltseva, M.Endres, G.Babnigg, V.Srajer, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases(Csgid). Time-Resolved Structure of Metallo Beta-Lactamase L1 in A Complex with Non-Hydrolyzed Moxalactam (100 Ms Snapshot) To Be Published.
Page generated: Sat Apr 8 04:17:12 2023

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