Zinc in PDB 7ufr: Cryo-Em Structure of BL_MAN38A at 2.7 A

The binding sites of Zinc atom in the Cryo-Em Structure of BL_MAN38A at 2.7 A (pdb code 7ufr). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Cryo-Em Structure of BL_MAN38A at 2.7 A, PDB code: 7ufr:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the Cryo-Em Structure of BL_MAN38A at 2.7 A


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of BL_MAN38A at 2.7 A within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1101 b:48.4 occ:1.00 OD2 A:ASP387 2.0 31.3 1.0 NE2 A:HIS597 2.0 28.7 1.0 OD1 A:ASP277 2.1 31.7 1.0 NE2 A:HIS275 2.2 29.4 1.0 CE1 A:HIS597 3.0 28.7 1.0 CD2 A:HIS597 3.0 28.7 1.0 CG A:ASP387 3.1 31.3 1.0 CG A:ASP277 3.2 31.7 1.0 CD2 A:HIS275 3.2 29.4 1.0 CE1 A:HIS275 3.2 29.4 1.0 CB A:ASP387 3.6 31.3 1.0 OD2 A:ASP277 3.6 31.7 1.0 OD2 A:ASP598 4.0 29.9 1.0 ND1 A:HIS597 4.1 28.7 1.0 CG A:HIS597 4.1 28.7 1.0 OD1 A:ASP387 4.2 31.3 1.0 ND1 A:HIS275 4.3 29.4 1.0 CG A:HIS275 4.3 29.4 1.0 OH A:TYR445 4.3 27.3 1.0 CB A:ASP277 4.5 31.7 1.0 CZ A:PHE596 4.9 29.8 1.0 CZ A:TYR445 4.9 27.3 1.0

Zinc binding site 2 out of 4 in the Cryo-Em Structure of BL_MAN38A at 2.7 A


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of BL_MAN38A at 2.7 A within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1101 b:47.3 occ:1.00 OD2 B:ASP387 2.0 31.0 1.0 NE2 B:HIS597 2.0 28.6 1.0 OD1 B:ASP277 2.1 31.3 1.0 NE2 B:HIS275 2.2 29.2 1.0 CE1 B:HIS597 3.0 28.6 1.0 CD2 B:HIS597 3.0 28.6 1.0 CG B:ASP387 3.1 31.0 1.0 CD2 B:HIS275 3.2 29.2 1.0 CG B:ASP277 3.2 31.3 1.0 CE1 B:HIS275 3.2 29.2 1.0 CB B:ASP387 3.6 31.0 1.0 OD2 B:ASP277 3.6 31.3 1.0 OD2 B:ASP598 4.0 29.8 1.0 ND1 B:HIS597 4.1 28.6 1.0 CG B:HIS597 4.2 28.6 1.0 OD1 B:ASP387 4.2 31.0 1.0 ND1 B:HIS275 4.3 29.2 1.0 CG B:HIS275 4.3 29.2 1.0 OH B:TYR445 4.3 27.1 1.0 CB B:ASP277 4.5 31.3 1.0 CZ B:PHE596 4.9 29.6 1.0 CZ B:TYR445 4.9 27.1 1.0

Zinc binding site 3 out of 4 in the Cryo-Em Structure of BL_MAN38A at 2.7 A


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Cryo-Em Structure of BL_MAN38A at 2.7 A within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn1101 b:47.2 occ:1.00 OD2 C:ASP387 2.0 31.0 1.0 NE2 C:HIS597 2.0 28.6 1.0 OD1 C:ASP277 2.1 31.5 1.0 NE2 C:HIS275 2.2 29.3 1.0 CE1 C:HIS597 3.0 28.6 1.0 CD2 C:HIS597 3.0 28.6 1.0 CG C:ASP387 3.1 31.0 1.0 CG C:ASP277 3.2 31.5 1.0 CD2 C:HIS275 3.2 29.3 1.0 CE1 C:HIS275 3.2 29.3 1.0 CB C:ASP387 3.6 31.0 1.0 OD2 C:ASP277 3.6 31.5 1.0 OD2 C:ASP598 4.0 30.0 1.0 ND1 C:HIS597 4.1 28.6 1.0 CG C:HIS597 4.1 28.6 1.0 OD1 C:ASP387 4.2 31.0 1.0 ND1 C:HIS275 4.3 29.3 1.0 OH C:TYR445 4.3 27.1 1.0 CG C:HIS275 4.3 29.3 1.0 CB C:ASP277 4.5 31.5 1.0 CZ C:PHE596 4.9 29.7 1.0 CZ C:TYR445 4.9 27.1 1.0

Zinc binding site 4 out of 4 in the Cryo-Em Structure of BL_MAN38A at 2.7 A


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Cryo-Em Structure of BL_MAN38A at 2.7 A within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn1101 b:47.6 occ:1.00 OD2 D:ASP387 2.0 31.0 1.0 NE2 D:HIS597 2.0 28.6 1.0 OD1 D:ASP277 2.1 31.6 1.0 NE2 D:HIS275 2.2 29.4 1.0 CE1 D:HIS597 3.0 28.6 1.0 CD2 D:HIS597 3.0 28.6 1.0 CG D:ASP387 3.1 31.0 1.0 CD2 D:HIS275 3.2 29.4 1.0 CG D:ASP277 3.2 31.6 1.0 CE1 D:HIS275 3.2 29.4 1.0 CB D:ASP387 3.6 31.0 1.0 OD2 D:ASP277 3.6 31.6 1.0 OD2 D:ASP598 4.0 29.9 1.0 ND1 D:HIS597 4.1 28.6 1.0 CG D:HIS597 4.1 28.6 1.0 OD1 D:ASP387 4.2 31.0 1.0 ND1 D:HIS275 4.3 29.4 1.0 CG D:HIS275 4.3 29.4 1.0 OH D:TYR445 4.3 27.0 1.0 CB D:ASP277 4.5 31.6 1.0 CZ D:PHE596 4.9 29.6 1.0 CZ D:TYR445 4.9 27.0 1.0

C.R.Santos, R.L.Cordeiro, M.N.Domingues, A.C.Borges, M.A.De Farias, M.Van Heel, M.T.Murakami, R.V.Portugal. Cryo-Em Structure of BL_MAN38A at 2.7 A Nat.Chem.Biol. 2022.
ISSN: ESSN 1552-4469