Zinc in PDB 7e62: Mouse TAB2 Nzf in Complex with LYS6-Linked Diubiquitin

The structure of Mouse TAB2 Nzf in Complex with LYS6-Linked Diubiquitin, PDB code: 7e62 was solved by Y.Sato, Y.Li, K.Okatsu, S.Fukai, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.46 / 1.99
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	45.694, 76.17, 114.813, 90, 90, 90
R / Rfree (%)	24.2 / 26.4

The binding sites of Zinc atom in the Mouse TAB2 Nzf in Complex with LYS6-Linked Diubiquitin (pdb code 7e62). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Mouse TAB2 Nzf in Complex with LYS6-Linked Diubiquitin, PDB code: 7e62:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Mouse TAB2 Nzf in Complex with LYS6-Linked Diubiquitin


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Mouse TAB2 Nzf in Complex with LYS6-Linked Diubiquitin within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn701 b:41.1 occ:1.00 SG C:CYS673 2.3 39.9 1.0 SG C:CYS684 2.3 44.0 1.0 SG C:CYS687 2.3 42.4 1.0 SG C:CYS670 2.4 45.0 1.0 CB C:CYS684 3.0 42.4 1.0 CB C:CYS670 3.1 42.1 1.0 CB C:CYS673 3.4 39.9 1.0 CB C:CYS687 3.6 43.7 1.0 N C:CYS673 3.8 40.4 1.0 N C:CYS687 3.9 41.4 1.0 CA C:CYS673 4.1 38.5 1.0 CA C:CYS687 4.3 41.5 1.0 CA C:CYS684 4.5 46.9 1.0 CB C:GLN686 4.5 42.2 1.0 CB C:MET689 4.5 41.6 1.0 CB C:ALA672 4.6 41.1 1.0 CA C:CYS670 4.6 43.2 1.0 CB C:PHE675 4.6 39.6 1.0 C C:CYS673 4.7 37.4 1.0 N C:PHE675 4.8 38.1 1.0 C C:ALA672 4.8 43.3 1.0 C C:GLN686 4.8 40.3 1.0 N C:THR674 4.9 38.2 1.0 C C:CYS687 4.9 42.6 1.0 N C:MET689 4.9 42.2 1.0 N C:GLN686 4.9 36.1 1.0 N C:GLU688 5.0 37.6 1.0

Zinc binding site 2 out of 2 in the Mouse TAB2 Nzf in Complex with LYS6-Linked Diubiquitin


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Mouse TAB2 Nzf in Complex with LYS6-Linked Diubiquitin within 5.0Å range: probe atom residue distance (Å) B Occ J:Zn701 b:41.7 occ:1.00 SG J:CYS673 2.3 42.0 1.0 SG J:CYS687 2.3 47.4 1.0 SG J:CYS684 2.3 41.5 1.0 SG J:CYS670 2.5 44.4 1.0 CB J:CYS670 3.0 38.0 1.0 CB J:CYS684 3.1 35.9 1.0 CB J:CYS673 3.4 42.4 1.0 CB J:CYS687 3.5 45.4 1.0 N J:CYS687 3.8 40.2 1.0 N J:CYS673 3.8 40.3 1.0 CA J:CYS687 4.2 41.3 1.0 CA J:CYS673 4.2 41.5 1.0 CB J:GLN686 4.4 44.0 1.0 CA J:CYS684 4.5 45.2 1.0 CA J:CYS670 4.5 40.9 1.0 CB J:ALA672 4.6 42.0 1.0 CB J:MET689 4.6 39.6 1.0 C J:GLN686 4.7 43.7 1.0 CB J:PHE675 4.7 40.1 1.0 C J:CYS687 4.7 40.2 1.0 C J:CYS673 4.8 39.5 1.0 C J:ALA672 4.8 41.8 1.0 N J:GLN686 4.9 35.0 1.0 CA J:GLN686 4.9 34.7 1.0 N J:GLU688 4.9 39.1 1.0 N J:MET689 4.9 43.6 1.0 N J:THR674 4.9 35.1 1.0 N J:PHE675 4.9 34.4 1.0

Y.Li, K.Okatsu, F.Shuya, Y.Sato. Structural Basis For Specific Recognition of LYS6-Linked Polyubiquitin Chains By Nzf Domain of TAB2 To Be Published.