Zinc in PDB 7e3j: Crystal Structure of Sars-Cov-2 Rbd Binding to Dog ACE2

Protein crystallography data

The structure of Crystal Structure of Sars-Cov-2 Rbd Binding to Dog ACE2, PDB code: 7e3j was solved by Z.Y.Zhang, Y.F.Zhang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.26 / 2.99
Space group I 4 2 2
Cell size a, b, c (Å), α, β, γ (°) 168.256, 168.256, 211.196, 90, 90, 90
R / Rfree (%) 22.7 / 24.8

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Sars-Cov-2 Rbd Binding to Dog ACE2 (pdb code 7e3j). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Sars-Cov-2 Rbd Binding to Dog ACE2, PDB code: 7e3j:

Zinc binding site 1 out of 1 in 7e3j

Go back to Zinc Binding Sites List in 7e3j
Zinc binding site 1 out of 1 in the Crystal Structure of Sars-Cov-2 Rbd Binding to Dog ACE2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Sars-Cov-2 Rbd Binding to Dog ACE2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn801

b:76.8
occ:1.00
OE2 A:GLU402 2.0 66.7 1.0
NE2 A:HIS374 2.2 51.0 1.0
NE2 A:HIS378 2.3 49.2 1.0
CD A:GLU402 2.9 67.5 1.0
CD2 A:HIS374 2.9 50.9 1.0
CD2 A:HIS378 2.9 47.4 1.0
OE1 A:GLU375 3.0 55.6 1.0
OE1 A:GLU402 3.1 66.9 1.0
CE1 A:HIS378 3.3 41.7 1.0
CE1 A:HIS374 3.4 49.5 1.0
CD A:GLU375 3.7 53.2 1.0
OE2 A:GLU375 3.7 53.8 1.0
CG A:HIS378 4.0 38.0 1.0
CG A:HIS374 4.1 42.4 1.0
ND1 A:HIS378 4.2 35.7 1.0
CG A:GLU402 4.2 58.4 1.0
ND1 A:HIS374 4.3 47.6 1.0
CG A:GLU375 4.9 39.6 1.0
O A:HIS374 5.0 43.0 1.0

Reference:

Z.Y.Zhang, Y.F.Zhang. Crystal Structure of Sars-Cov-2 Rbd Binding to Dog ACE2 To Be Published.
Page generated: Sat Apr 17 17:48:17 2021

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