Zinc in PDB 7dxe: Structure of TRPC3 Gain of Function Mutation R803C at 3.2 Angstrom in 1340NM Free Calcium State
Zinc Binding Sites:
The binding sites of Zinc atom in the Structure of TRPC3 Gain of Function Mutation R803C at 3.2 Angstrom in 1340NM Free Calcium State
(pdb code 7dxe). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the
Structure of TRPC3 Gain of Function Mutation R803C at 3.2 Angstrom in 1340NM Free Calcium State, PDB code: 7dxe:
Jump to Zinc binding site number:
1;
2;
3;
4;
Zinc binding site 1 out
of 4 in 7dxe
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Zinc Binding Sites List in 7dxe
Zinc binding site 1 out
of 4 in the Structure of TRPC3 Gain of Function Mutation R803C at 3.2 Angstrom in 1340NM Free Calcium State
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Structure of TRPC3 Gain of Function Mutation R803C at 3.2 Angstrom in 1340NM Free Calcium State within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Zn902
b:206.2
occ:1.00
|
ND1
|
D:HIS178
|
2.1
|
189.5
|
1.0
|
SG
|
D:CYS187
|
2.4
|
178.8
|
1.0
|
SG
|
D:CYS184
|
2.4
|
186.4
|
1.0
|
SG
|
D:CYS182
|
2.4
|
188.2
|
1.0
|
CG
|
D:HIS178
|
2.9
|
177.6
|
1.0
|
CE1
|
D:HIS178
|
2.9
|
190.9
|
1.0
|
CB
|
D:CYS187
|
3.2
|
177.4
|
1.0
|
CB
|
D:HIS178
|
3.3
|
163.8
|
1.0
|
CB
|
D:CYS182
|
3.4
|
167.4
|
1.0
|
CB
|
D:CYS184
|
3.6
|
178.8
|
1.0
|
CD2
|
D:HIS178
|
3.9
|
175.8
|
1.0
|
NE2
|
D:HIS178
|
3.9
|
188.2
|
1.0
|
N
|
D:CYS187
|
4.2
|
174.1
|
1.0
|
CA
|
D:CYS187
|
4.3
|
172.1
|
1.0
|
N
|
D:CYS184
|
4.3
|
170.2
|
1.0
|
CA
|
D:CYS184
|
4.5
|
171.2
|
1.0
|
CA
|
D:CYS182
|
4.7
|
162.5
|
1.0
|
CA
|
D:HIS178
|
4.8
|
154.0
|
1.0
|
C
|
D:CYS182
|
4.8
|
165.4
|
1.0
|
O
|
D:CYS184
|
5.0
|
177.9
|
1.0
|
|
Zinc binding site 2 out
of 4 in 7dxe
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Zinc Binding Sites List in 7dxe
Zinc binding site 2 out
of 4 in the Structure of TRPC3 Gain of Function Mutation R803C at 3.2 Angstrom in 1340NM Free Calcium State
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Structure of TRPC3 Gain of Function Mutation R803C at 3.2 Angstrom in 1340NM Free Calcium State within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn904
b:206.2
occ:1.00
|
ND1
|
A:HIS178
|
2.1
|
189.5
|
1.0
|
SG
|
A:CYS187
|
2.4
|
178.8
|
1.0
|
SG
|
A:CYS184
|
2.4
|
186.4
|
1.0
|
SG
|
A:CYS182
|
2.4
|
188.2
|
1.0
|
CG
|
A:HIS178
|
2.9
|
177.6
|
1.0
|
CE1
|
A:HIS178
|
2.9
|
190.9
|
1.0
|
CB
|
A:CYS187
|
3.2
|
177.4
|
1.0
|
CB
|
A:HIS178
|
3.3
|
163.8
|
1.0
|
CB
|
A:CYS182
|
3.4
|
167.4
|
1.0
|
CB
|
A:CYS184
|
3.6
|
178.8
|
1.0
|
CD2
|
A:HIS178
|
3.9
|
175.8
|
1.0
|
NE2
|
A:HIS178
|
3.9
|
188.2
|
1.0
|
N
|
A:CYS187
|
4.2
|
174.1
|
1.0
|
CA
|
A:CYS187
|
4.3
|
172.1
|
1.0
|
N
|
A:CYS184
|
4.3
|
170.2
|
1.0
|
CA
|
A:CYS184
|
4.5
|
171.2
|
1.0
|
CA
|
A:CYS182
|
4.7
|
162.5
|
1.0
|
CA
|
A:HIS178
|
4.8
|
154.0
|
1.0
|
C
|
A:CYS182
|
4.8
|
165.4
|
1.0
|
O
|
A:CYS184
|
5.0
|
177.9
|
1.0
|
|
Zinc binding site 3 out
of 4 in 7dxe
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Zinc Binding Sites List in 7dxe
Zinc binding site 3 out
of 4 in the Structure of TRPC3 Gain of Function Mutation R803C at 3.2 Angstrom in 1340NM Free Calcium State
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 3 of Structure of TRPC3 Gain of Function Mutation R803C at 3.2 Angstrom in 1340NM Free Calcium State within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Zn902
b:206.2
occ:1.00
|
ND1
|
B:HIS178
|
2.1
|
189.5
|
1.0
|
SG
|
B:CYS187
|
2.4
|
178.8
|
1.0
|
SG
|
B:CYS184
|
2.4
|
186.4
|
1.0
|
SG
|
B:CYS182
|
2.4
|
188.2
|
1.0
|
CG
|
B:HIS178
|
2.9
|
177.6
|
1.0
|
CE1
|
B:HIS178
|
2.9
|
190.9
|
1.0
|
CB
|
B:CYS187
|
3.2
|
177.4
|
1.0
|
CB
|
B:HIS178
|
3.3
|
163.8
|
1.0
|
CB
|
B:CYS182
|
3.4
|
167.4
|
1.0
|
CB
|
B:CYS184
|
3.6
|
178.8
|
1.0
|
CD2
|
B:HIS178
|
3.9
|
175.8
|
1.0
|
NE2
|
B:HIS178
|
3.9
|
188.2
|
1.0
|
N
|
B:CYS187
|
4.2
|
174.1
|
1.0
|
CA
|
B:CYS187
|
4.3
|
172.1
|
1.0
|
N
|
B:CYS184
|
4.3
|
170.2
|
1.0
|
CA
|
B:CYS184
|
4.5
|
171.2
|
1.0
|
CA
|
B:CYS182
|
4.7
|
162.5
|
1.0
|
CA
|
B:HIS178
|
4.8
|
154.0
|
1.0
|
C
|
B:CYS182
|
4.8
|
165.4
|
1.0
|
O
|
B:CYS184
|
5.0
|
177.9
|
1.0
|
|
Zinc binding site 4 out
of 4 in 7dxe
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Zinc Binding Sites List in 7dxe
Zinc binding site 4 out
of 4 in the Structure of TRPC3 Gain of Function Mutation R803C at 3.2 Angstrom in 1340NM Free Calcium State
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 4 of Structure of TRPC3 Gain of Function Mutation R803C at 3.2 Angstrom in 1340NM Free Calcium State within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Zn904
b:206.2
occ:1.00
|
ND1
|
C:HIS178
|
2.1
|
189.5
|
1.0
|
SG
|
C:CYS187
|
2.4
|
178.8
|
1.0
|
SG
|
C:CYS184
|
2.4
|
186.4
|
1.0
|
SG
|
C:CYS182
|
2.4
|
188.2
|
1.0
|
CG
|
C:HIS178
|
2.9
|
177.6
|
1.0
|
CE1
|
C:HIS178
|
2.9
|
190.9
|
1.0
|
CB
|
C:CYS187
|
3.2
|
177.4
|
1.0
|
CB
|
C:HIS178
|
3.3
|
163.8
|
1.0
|
CB
|
C:CYS182
|
3.4
|
167.4
|
1.0
|
CB
|
C:CYS184
|
3.6
|
178.8
|
1.0
|
CD2
|
C:HIS178
|
3.9
|
175.8
|
1.0
|
NE2
|
C:HIS178
|
3.9
|
188.2
|
1.0
|
N
|
C:CYS187
|
4.2
|
174.1
|
1.0
|
CA
|
C:CYS187
|
4.3
|
172.1
|
1.0
|
N
|
C:CYS184
|
4.3
|
170.2
|
1.0
|
CA
|
C:CYS184
|
4.5
|
171.2
|
1.0
|
CA
|
C:CYS182
|
4.7
|
162.5
|
1.0
|
CA
|
C:HIS178
|
4.8
|
154.0
|
1.0
|
C
|
C:CYS182
|
4.8
|
165.4
|
1.0
|
O
|
C:CYS184
|
5.0
|
177.9
|
1.0
|
|
Reference:
W.Guo,
Q.Tang,
M.Wei,
Y.Kang,
J.X.Wu,
L.Chen.
Structural Mechanism of Human TRPC3 and TRPC6 Channel Regulation By Their Intracellular Calcium-Binding Sites. Neuron V. 110 1023 2022.
ISSN: ISSN 0896-6273
PubMed: 35051376
DOI: 10.1016/J.NEURON.2021.12.023
Page generated: Tue Oct 29 19:26:51 2024
|