Zinc in PDB 6xmy: Crystal Structure of 4-Hydroxythreonine-4-Phosphate Dehydrogenase From Legionella Pneumophila in Complex with Nad

Enzymatic activity of Crystal Structure of 4-Hydroxythreonine-4-Phosphate Dehydrogenase From Legionella Pneumophila in Complex with Nad

All present enzymatic activity of Crystal Structure of 4-Hydroxythreonine-4-Phosphate Dehydrogenase From Legionella Pneumophila in Complex with Nad:
1.1.1.262;

Protein crystallography data

The structure of Crystal Structure of 4-Hydroxythreonine-4-Phosphate Dehydrogenase From Legionella Pneumophila in Complex with Nad, PDB code: 6xmy was solved by Seattle Structural Genomics Center For Infectious Disease, Seattlestructural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.23 / 1.40
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 153.350, 36.770, 56.620, 90.00, 103.07, 90.00
R / Rfree (%) 13.8 / 17.2

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of 4-Hydroxythreonine-4-Phosphate Dehydrogenase From Legionella Pneumophila in Complex with Nad (pdb code 6xmy). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of 4-Hydroxythreonine-4-Phosphate Dehydrogenase From Legionella Pneumophila in Complex with Nad, PDB code: 6xmy:

Zinc binding site 1 out of 1 in 6xmy

Go back to Zinc Binding Sites List in 6xmy
Zinc binding site 1 out of 1 in the Crystal Structure of 4-Hydroxythreonine-4-Phosphate Dehydrogenase From Legionella Pneumophila in Complex with Nad


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of 4-Hydroxythreonine-4-Phosphate Dehydrogenase From Legionella Pneumophila in Complex with Nad within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn410

b:13.2
occ:0.55
 O A:HOH706 1.9 29.2 1.0
NE2 A:HIS260 2.2 12.3 1.0
O A:HOH644 2.2 33.0 1.0
NE2 A:HIS160 2.3 17.8 1.0
CE1 A:HIS260 3.2 10.7 1.0
CD2 A:HIS260 3.2 10.7 1.0
CE1 A:HIS160 3.2 18.5 1.0
CD2 A:HIS160 3.3 16.3 1.0
ND1 A:HIS260 4.3 9.2 1.0
CG A:HIS260 4.3 10.0 1.0
O A:HOH788 4.3 8.1 1.0
ND1 A:HIS160 4.4 18.7 1.0
CG A:HIS160 4.5 15.8 1.0
C5N A:NAD401 4.5 12.4 1.0
CD1 A:LEU264 4.5 14.7 1.0
NZ A:LYS117 4.7 12.9 0.5
CE A:MET145 4.8 14.2 0.4
C6N A:NAD401 4.9 11.7 1.0
O4 A:SO4402 5.0 14.7 1.0

Reference:

N.D.Debouver, S.J.Mayclin, D.D.Lorimer, P.S.Horanyi, T.E.Edwards. Crystal Structure of 4-Hydroxythreonine-4-Phosphate Dehydrogenase From Legionella Pneumophila in Complex with Nad To Be Published.
Page generated: Wed Dec 16 13:10:54 2020

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