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Zinc in PDB 6ueb: Structure of Rabies Sad-B19 L-P Complex From Cryo-Em

Enzymatic activity of Structure of Rabies Sad-B19 L-P Complex From Cryo-Em

All present enzymatic activity of Structure of Rabies Sad-B19 L-P Complex From Cryo-Em:
2.1.1.296; 2.1.1.56; 2.7.7.48; 2.7.7.88;

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of Rabies Sad-B19 L-P Complex From Cryo-Em (pdb code 6ueb). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of Rabies Sad-B19 L-P Complex From Cryo-Em, PDB code: 6ueb:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 6ueb

Go back to Zinc Binding Sites List in 6ueb
Zinc binding site 1 out of 2 in the Structure of Rabies Sad-B19 L-P Complex From Cryo-Em


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Rabies Sad-B19 L-P Complex From Cryo-Em within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn2601

b:0.6
occ:1.00
NE2 A:HIS1312 2.0 0.6 1.0
NE2 A:HIS1314 2.1 0.5 1.0
SG A:CYS1132 2.2 0.4 1.0
SG A:CYS1134 2.3 0.5 1.0
CE1 A:HIS1314 2.8 0.5 1.0
HE1 A:HIS1314 2.8 0.5 1.0
CD2 A:HIS1312 2.9 0.6 1.0
CE1 A:HIS1312 2.9 0.6 1.0
HD2 A:HIS1312 3.1 0.6 1.0
HB3 A:CYS1132 3.1 0.4 1.0
HE1 A:HIS1312 3.1 0.6 1.0
CD2 A:HIS1314 3.2 0.5 1.0
CB A:CYS1132 3.3 0.4 1.0
HB3 A:CYS1134 3.5 0.5 1.0
HD2 A:HIS1314 3.6 0.5 1.0
CB A:CYS1134 3.6 0.5 1.0
HB2 A:CYS1132 3.7 0.4 1.0
ND1 A:HIS1312 3.9 0.6 1.0
CG A:HIS1312 3.9 0.6 1.0
H A:CYS1134 4.0 0.5 1.0
ND1 A:HIS1314 4.0 0.5 1.0
HB2 A:CYS1134 4.1 0.5 1.0
CG A:HIS1314 4.2 0.5 1.0
CA A:CYS1132 4.6 0.4 1.0
HD3 A:ARG1143 4.7 0.8 1.0
HB2 A:LYS1127 4.7 0.4 1.0
HD1 A:HIS1312 4.7 0.6 1.0
N A:CYS1134 4.7 0.5 1.0
O A:CYS1132 4.7 0.4 1.0
HD1 A:HIS1314 4.7 0.5 1.0
C A:CYS1132 4.8 0.4 1.0
CA A:CYS1134 4.8 0.5 1.0
H A:GLY1135 4.8 0.5 1.0
HA A:CYS1132 4.9 0.4 1.0
O A:HIS1312 4.9 0.6 1.0

Zinc binding site 2 out of 2 in 6ueb

Go back to Zinc Binding Sites List in 6ueb
Zinc binding site 2 out of 2 in the Structure of Rabies Sad-B19 L-P Complex From Cryo-Em


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of Rabies Sad-B19 L-P Complex From Cryo-Em within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn2602

b:0.6
occ:1.00
OE2 A:GLU1120 2.0 0.6 1.0
SG A:CYS1320 2.2 0.2 1.0
HA A:CYS1093 2.4 0.4 1.0
SG A:CYS1317 2.5 0.7 1.0
SG A:CYS1093 2.5 0.4 1.0
CD A:GLU1120 2.6 0.6 1.0
HB3 A:CYS1317 2.8 0.7 1.0
HG2 A:GLU1120 2.9 0.6 1.0
CB A:CYS1317 3.0 0.7 1.0
HB2 A:CYS1317 3.1 0.7 1.0
CA A:CYS1093 3.2 0.4 1.0
CG A:GLU1120 3.3 0.6 1.0
OE1 A:GLU1120 3.3 0.6 1.0
CB A:CYS1093 3.4 0.4 1.0
H A:CYS1320 3.5 0.2 1.0
CB A:CYS1320 3.7 0.2 1.0
HB2 A:CYS1093 3.8 0.4 1.0
C A:CYS1093 3.8 0.4 1.0
N A:CYS1320 3.9 0.2 1.0
HG3 A:GLU1120 3.9 0.6 1.0
HA A:CYS1320 4.0 0.2 1.0
H A:SER1094 4.0 1.0 1.0
HB2 A:CYS1320 4.0 0.2 1.0
CA A:CYS1320 4.1 0.2 1.0
N A:SER1094 4.2 1.0 1.0
H A:CYS1093 4.2 0.4 1.0
HB3 A:CYS1093 4.2 0.4 1.0
HB3 A:GLU1120 4.3 0.6 1.0
N A:CYS1093 4.3 0.4 1.0
HB3 A:CYS1320 4.4 0.2 1.0
H A:SER1095 4.4 99.5 1.0
CB A:GLU1120 4.4 0.6 1.0
O A:CYS1093 4.5 0.4 1.0
HB2 A:ARG1319 4.5 0.2 1.0
CA A:CYS1317 4.5 0.7 1.0
C A:ARG1319 4.7 0.2 1.0
HA A:CYS1317 4.8 0.7 1.0
HH12 A:ARG926 4.8 97.2 1.0
H A:ARG1319 4.9 0.2 1.0
HH11 A:ARG926 5.0 97.2 1.0
HB2 A:SER1095 5.0 99.5 1.0

Reference:

J.A.Horwitz, S.Jenni, S.C.Harrison, S.P.J.Whelan. Structure of A Rabies Virus Polymerase Complex From Electron Cryo-Microscopy. Proc.Natl.Acad.Sci.Usa 2020.
ISSN: ESSN 1091-6490
PubMed: 31953264
DOI: 10.1073/PNAS.1918809117
Page generated: Wed Dec 16 12:58:36 2020

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