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Zinc in PDB 5z34: The Structure of A Chitin Deacetylase From Bombyx Mori Provide the First Insight Into Insect Chitin Deacetylation Mechanism

Enzymatic activity of The Structure of A Chitin Deacetylase From Bombyx Mori Provide the First Insight Into Insect Chitin Deacetylation Mechanism

All present enzymatic activity of The Structure of A Chitin Deacetylase From Bombyx Mori Provide the First Insight Into Insect Chitin Deacetylation Mechanism:
3.5.1.41;

Protein crystallography data

The structure of The Structure of A Chitin Deacetylase From Bombyx Mori Provide the First Insight Into Insect Chitin Deacetylation Mechanism, PDB code: 5z34 was solved by L.Liu, Y.Zhou, Q.Yang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.96 / 2.40
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 115.017, 115.017, 106.510, 90.00, 90.00, 120.00
R / Rfree (%) 17.5 / 19.1

Zinc Binding Sites:

The binding sites of Zinc atom in the The Structure of A Chitin Deacetylase From Bombyx Mori Provide the First Insight Into Insect Chitin Deacetylation Mechanism (pdb code 5z34). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the The Structure of A Chitin Deacetylase From Bombyx Mori Provide the First Insight Into Insect Chitin Deacetylation Mechanism, PDB code: 5z34:

Zinc binding site 1 out of 1 in 5z34

Go back to Zinc Binding Sites List in 5z34
Zinc binding site 1 out of 1 in the The Structure of A Chitin Deacetylase From Bombyx Mori Provide the First Insight Into Insect Chitin Deacetylation Mechanism


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Structure of A Chitin Deacetylase From Bombyx Mori Provide the First Insight Into Insect Chitin Deacetylation Mechanism within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:49.6
occ:1.00
 NE2 A:HIS117 2.0 42.7 1.0
NE2 A:HIS121 2.1 43.0 1.0
OD1 A:ASP63 2.2 35.4 1.0
O A:HOH566 2.5 40.6 1.0
CE1 A:HIS117 2.9 34.8 1.0
CD2 A:HIS117 3.0 35.7 1.0
CD2 A:HIS121 3.1 39.4 1.0
CE1 A:HIS121 3.1 35.9 1.0
CG A:ASP63 3.2 39.9 1.0
OD2 A:ASP63 3.5 40.8 1.0
ND1 A:HIS117 4.0 38.8 1.0
CG A:HIS117 4.1 37.6 1.0
CB A:ASP62 4.2 36.9 1.0
ND1 A:HIS121 4.2 39.7 1.0
NE2 A:HIS282 4.3 43.2 1.0
CG A:HIS121 4.3 43.9 1.0
OD2 A:ASP62 4.4 43.0 1.0
CB A:ASP63 4.5 33.4 1.0
N A:ASP63 4.6 38.7 1.0
CA A:PRO164 4.7 38.3 1.0
CG A:ASP62 4.7 39.2 1.0
N A:PHE165 4.7 40.4 1.0
CD2 A:HIS282 4.9 36.0 1.0
CA A:ASP63 4.9 37.0 1.0

Reference:

L.Liu, Y.Zhou, Q.Yang. The Structure of A Chitin Deacetylase From Bombyx Mori Provide the First Insight Into Insect Chitin Deacetylation Mechanism To Be Published.
Page generated: Mon Oct 28 16:32:17 2024

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