Zinc in PDB 2bco: X-Ray Structure of Succinylglutamate Desuccinalase From Vibrio Parahaemolyticus (Rimd 2210633) at the Resolution 2.3 A, Northeast Structural Genomics Target VPR14

The structure of X-Ray Structure of Succinylglutamate Desuccinalase From Vibrio Parahaemolyticus (Rimd 2210633) at the Resolution 2.3 A, Northeast Structural Genomics Target VPR14, PDB code: 2bco was solved by A.P.Kuzin, M.Abashidze, F.Forouhar, J.Benach, W.Zhou, T.Acton, Northeast Structural Genomics Consortium (Nesg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.26 / 2.33
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	62.852, 72.555, 93.032, 90.00, 105.66, 90.00
R / Rfree (%)	21.3 / 26.7

The binding sites of Zinc atom in the X-Ray Structure of Succinylglutamate Desuccinalase From Vibrio Parahaemolyticus (Rimd 2210633) at the Resolution 2.3 A, Northeast Structural Genomics Target VPR14 (pdb code 2bco). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the X-Ray Structure of Succinylglutamate Desuccinalase From Vibrio Parahaemolyticus (Rimd 2210633) at the Resolution 2.3 A, Northeast Structural Genomics Target VPR14, PDB code: 2bco:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the X-Ray Structure of Succinylglutamate Desuccinalase From Vibrio Parahaemolyticus (Rimd 2210633) at the Resolution 2.3 A, Northeast Structural Genomics Target VPR14


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of X-Ray Structure of Succinylglutamate Desuccinalase From Vibrio Parahaemolyticus (Rimd 2210633) at the Resolution 2.3 A, Northeast Structural Genomics Target VPR14 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn501 b:46.0 occ:1.00 OE1 A:GLU66 2.3 17.2 1.0 ND1 A:HIS155 2.3 11.7 1.0 ND1 A:HIS63 2.4 11.6 1.0 OE2 A:GLU66 2.5 10.0 1.0 O A:HOH584 2.6 20.9 1.0 CD A:GLU66 2.7 12.8 1.0 CG A:HIS155 3.1 11.2 1.0 CB A:HIS155 3.1 9.1 1.0 CE1 A:HIS63 3.1 11.6 1.0 CG A:HIS63 3.4 12.7 1.0 CE1 A:HIS155 3.4 11.4 1.0 CB A:HIS63 3.8 10.3 1.0 O A:HOH536 3.9 16.3 1.0 O A:CYS156 4.0 19.2 1.0 CA A:HIS155 4.2 9.6 1.0 CG A:GLU66 4.2 9.8 1.0 N A:CYS156 4.3 10.1 1.0 NE2 A:HIS63 4.3 13.3 1.0 CD2 A:HIS155 4.3 13.6 1.0 CD2 A:HIS63 4.4 13.5 1.0 NE2 A:HIS155 4.4 17.4 1.0 O A:HOH552 4.5 17.4 1.0 OE1 A:GLU219 4.7 38.7 1.0 C A:HIS155 4.8 11.8 1.0 C A:CYS156 5.0 16.3 1.0 NH2 A:ARG106 5.0 39.7 1.0 CB A:GLU66 5.0 11.4 1.0

Zinc binding site 2 out of 2 in the X-Ray Structure of Succinylglutamate Desuccinalase From Vibrio Parahaemolyticus (Rimd 2210633) at the Resolution 2.3 A, Northeast Structural Genomics Target VPR14


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of X-Ray Structure of Succinylglutamate Desuccinalase From Vibrio Parahaemolyticus (Rimd 2210633) at the Resolution 2.3 A, Northeast Structural Genomics Target VPR14 within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn502 b:62.9 occ:1.00 ND1 B:HIS63 2.4 24.6 1.0 ND1 B:HIS155 2.5 24.1 1.0 OE1 B:GLU66 2.6 55.6 1.0 O B:HOH551 2.7 34.5 1.0 CG B:HIS155 3.1 22.8 1.0 CB B:HIS155 3.2 22.9 1.0 CD B:GLU66 3.2 58.8 1.0 CG B:HIS63 3.3 23.4 1.0 CG B:GLU66 3.3 54.7 1.0 CE1 B:HIS63 3.4 22.4 1.0 O B:HOH509 3.5 24.4 1.0 CB B:HIS63 3.5 19.6 1.0 CE1 B:HIS155 3.5 23.4 1.0 O B:CYS156 3.7 27.1 1.0 N B:CYS156 4.0 25.4 1.0 CA B:HIS155 4.1 24.4 1.0 OE2 B:GLU66 4.2 63.4 1.0 CD2 B:HIS155 4.2 22.9 1.0 CB B:GLU66 4.4 49.1 1.0 NE2 B:HIS155 4.4 21.1 1.0 CD2 B:HIS63 4.4 23.4 1.0 NE2 B:HIS63 4.5 23.9 1.0 C B:HIS155 4.6 25.2 1.0 C B:CYS156 4.7 30.4 1.0 CA B:HIS63 4.8 23.1 1.0 OE2 B:GLU219 4.9 49.8 1.0 N B:HIS63 4.9 22.8 1.0 CA B:CYS156 5.0 28.2 1.0 OE1 B:GLU219 5.0 50.7 1.0

A.P.Kuzin, M.Abashidze, F.Forouhar, J.Benach, W.Zhou, T.Acton, R.Xiao, K.Conover, L.C.Ma, R.Kellie, K.E.Cunningham, G.T.Montelione, L.Tong, J.F.Hunt. X-Ray Structure of Succinylglutamate Desuccinalase From Vibrio Parahaemolyticus (Rimd 2210633) at the Resolution 2.3 A, Northeast Structural Genomics Target VPR14 To Be Published.