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Zinc in PDB 8r72: Polysaccharide Lyase BTPL33HA (BT4410) Y291A with Ha DP4 Collected at 1.33 A

Protein crystallography data

The structure of Polysaccharide Lyase BTPL33HA (BT4410) Y291A with Ha DP4 Collected at 1.33 A, PDB code: 8r72 was solved by A.Cartmell, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 52.13 / 2.58
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 53.87, 137.4, 203.33, 90, 90, 90
R / Rfree (%) 21.9 / 28.1

Zinc Binding Sites:

The binding sites of Zinc atom in the Polysaccharide Lyase BTPL33HA (BT4410) Y291A with Ha DP4 Collected at 1.33 A (pdb code 8r72). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Polysaccharide Lyase BTPL33HA (BT4410) Y291A with Ha DP4 Collected at 1.33 A, PDB code: 8r72:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 8r72

Go back to Zinc Binding Sites List in 8r72
Zinc binding site 1 out of 2 in the Polysaccharide Lyase BTPL33HA (BT4410) Y291A with Ha DP4 Collected at 1.33 A


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Polysaccharide Lyase BTPL33HA (BT4410) Y291A with Ha DP4 Collected at 1.33 A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn701

b:45.6
occ:1.00
HE2 A:HIS482 1.3 36.0 0.0
HD1 A:HIS438 1.3 44.8 0.0
O A:HOH801 1.9 30.0 1.0
O A:HOH803 2.0 50.1 1.0
NE2 A:HIS482 2.1 36.6 1.0
ND1 A:HIS438 2.1 44.8 1.0
OD1 A:ASP456 2.2 34.4 1.0
O A:HOH802 2.2 27.8 1.0
CE1 A:HIS438 2.8 47.4 1.0
HE1 A:HIS438 2.8 45.8 1.0
CD2 A:HIS482 3.0 36.8 1.0
CE1 A:HIS482 3.1 38.7 1.0
HD2 A:HIS482 3.2 36.5 1.0
CG A:ASP456 3.2 37.0 1.0
CG A:HIS438 3.3 43.5 1.0
HE1 A:HIS482 3.3 38.0 1.0
H A:GLY458 3.5 34.6 1.0
OD2 A:ASP456 3.7 37.3 1.0
HB3 A:HIS438 3.7 42.2 1.0
O A:THR476 3.8 37.4 1.0
HB2 A:HIS438 3.8 42.2 1.0
CB A:HIS438 3.9 42.2 1.0
NE2 A:HIS438 4.0 43.2 1.0
HA2 A:GLY458 4.1 35.4 1.0
H A:ALA335 4.1 45.6 1.0
O A:ALA335 4.1 34.1 1.0
CG A:HIS482 4.2 35.9 1.0
ND1 A:HIS482 4.2 38.0 1.0
CD2 A:HIS438 4.2 46.3 1.0
N A:GLY458 4.3 35.5 1.0
CB A:ASP456 4.5 38.2 1.0
O A:ASN333 4.5 33.7 1.0
H A:ALA457 4.5 34.7 1.0
HA A:PHE334 4.5 42.7 1.0
N A:ALA335 4.6 47.2 1.0
HB3 A:ASP440 4.6 39.1 1.0
HB3 A:ASP456 4.6 37.7 1.0
CA A:GLY458 4.7 36.5 1.0
HA A:ASP456 4.7 36.2 1.0
OD2 A:ASP440 4.7 37.2 1.0
HE2 A:HIS438 4.7 43.4 0.0
N A:ALA457 4.7 35.5 1.0
HB3 A:ALA457 4.8 34.9 1.0
HA A:ALA335 4.8 43.0 1.0
C A:ALA335 4.8 39.2 1.0
C A:ASP456 4.9 33.2 1.0
CA A:ASP456 4.9 37.5 1.0
HD1 A:HIS482 5.0 37.2 0.0
CA A:ALA335 5.0 44.2 1.0

Zinc binding site 2 out of 2 in 8r72

Go back to Zinc Binding Sites List in 8r72
Zinc binding site 2 out of 2 in the Polysaccharide Lyase BTPL33HA (BT4410) Y291A with Ha DP4 Collected at 1.33 A


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Polysaccharide Lyase BTPL33HA (BT4410) Y291A with Ha DP4 Collected at 1.33 A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn701

b:45.8
occ:1.00
HE2 B:HIS482 1.1 39.4 0.0
HD1 B:HIS438 1.3 63.8 0.0
NE2 B:HIS482 1.9 39.4 1.0
ND1 B:HIS438 2.1 65.0 1.0
O B:HOH802 2.1 30.5 1.0
OD1 B:ASP456 2.2 45.2 1.0
O B:HOH803 2.5 88.0 1.0
O B:HOH801 2.6 38.7 1.0
CE1 B:HIS482 2.7 44.3 1.0
CE1 B:HIS438 2.8 65.9 1.0
HE1 B:HIS438 2.8 66.3 1.0
HE1 B:HIS482 2.9 43.3 1.0
CD2 B:HIS482 2.9 42.8 1.0
CG B:ASP456 3.2 45.6 1.0
HD2 B:HIS482 3.2 42.4 1.0
CG B:HIS438 3.3 60.2 1.0
HB3 B:HIS438 3.5 56.6 1.0
OD2 B:ASP456 3.5 51.4 1.0
CB B:HIS438 3.8 57.2 1.0
HB2 B:HIS438 3.8 56.5 1.0
ND1 B:HIS482 3.9 44.9 1.0
H B:GLY458 3.9 48.5 1.0
O B:THR476 3.9 47.0 1.0
O B:ALA335 4.0 67.5 1.0
CG B:HIS482 4.0 44.6 1.0
NE2 B:HIS438 4.0 68.9 1.0
H B:ALA335 4.1 55.7 1.0
OD2 B:ASP440 4.2 39.0 1.0
CD2 B:HIS438 4.2 65.3 1.0
HB3 B:ASP440 4.3 49.2 1.0
H B:ALA457 4.3 45.8 1.0
CB B:ASP456 4.5 45.1 1.0
N B:ALA335 4.5 56.3 1.0
HA2 B:GLY458 4.6 54.6 1.0
HA B:ALA335 4.6 54.7 1.0
HA B:PHE334 4.6 58.2 1.0
HB3 B:ASP456 4.7 45.7 1.0
N B:GLY458 4.7 48.4 1.0
HD1 B:HIS482 4.7 45.3 0.0
C B:ALA335 4.7 60.8 1.0
HA B:ASP456 4.7 46.0 1.0
N B:ALA457 4.8 45.1 1.0
HE2 B:HIS438 4.8 70.2 0.0
HB3 B:ALA457 4.8 47.9 1.0
O B:ASN333 4.8 55.7 1.0
CA B:ALA335 4.9 53.2 1.0
CB B:ASP440 5.0 48.0 1.0
CA B:ASP456 5.0 47.0 1.0
HB2 B:ASP440 5.0 49.2 1.0

Reference:

A.Cartmell, M.Couturier. Polysaccharide Lyase Family 33 Utilises An Evolutionary Conserved Mechanism of Conformationally Induced Catalysis to Drive Processivity To Be Published.
Page generated: Tue Dec 10 21:50:55 2024

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