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Zinc in PDB 8q6u: Crystal Structure of A Double Mutant Acetyltransferase From Bacillus Cereus Species.

Protein crystallography data

The structure of Crystal Structure of A Double Mutant Acetyltransferase From Bacillus Cereus Species., PDB code: 8q6u was solved by H.L.Silvestre, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.32 / 1.52
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 41.573, 83.154, 53.194, 90, 100.39, 90
R / Rfree (%) 18.7 / 21.6

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of A Double Mutant Acetyltransferase From Bacillus Cereus Species. (pdb code 8q6u). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of A Double Mutant Acetyltransferase From Bacillus Cereus Species., PDB code: 8q6u:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 8q6u

Go back to Zinc Binding Sites List in 8q6u
Zinc binding site 1 out of 2 in the Crystal Structure of A Double Mutant Acetyltransferase From Bacillus Cereus Species.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Double Mutant Acetyltransferase From Bacillus Cereus Species. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn204

b:16.6
occ:1.00
NE2 A:HIS107 2.0 16.4 1.0
OE2 A:GLU112 2.0 21.2 1.0
O A:HOH424 2.3 22.0 1.0
CE1 A:HIS107 3.0 18.3 1.0
CD A:GLU112 3.0 16.9 1.0
CD2 A:HIS107 3.0 14.8 1.0
CG A:GLU112 3.3 15.7 1.0
ND1 A:HIS107 4.1 17.2 1.0
CG A:HIS107 4.1 13.6 1.0
OE1 A:GLU112 4.1 20.3 1.0
CB A:GLU112 4.8 16.7 1.0
O A:HOH365 4.8 32.7 1.0

Zinc binding site 2 out of 2 in 8q6u

Go back to Zinc Binding Sites List in 8q6u
Zinc binding site 2 out of 2 in the Crystal Structure of A Double Mutant Acetyltransferase From Bacillus Cereus Species.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of A Double Mutant Acetyltransferase From Bacillus Cereus Species. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn204

b:17.1
occ:1.00
OE2 B:GLU112 1.9 18.6 1.0
NE2 B:HIS107 2.0 17.7 1.0
O B:HOH402 2.4 25.9 1.0
CD B:GLU112 2.8 20.5 1.0
CD2 B:HIS107 3.0 17.1 1.0
CE1 B:HIS107 3.1 18.7 1.0
CG B:GLU112 3.2 18.0 1.0
OE1 B:GLU112 4.0 21.7 1.0
O B:HOH414 4.1 40.1 1.0
CG B:HIS107 4.1 16.1 1.0
ND1 B:HIS107 4.2 19.3 1.0
CB B:GLU112 4.7 17.1 1.0
O B:HOH371 4.9 44.1 1.0

Reference:

H.Leonardo Silvestre, J.L.Asensio, T.L.Blundell, A.Bastida, V.M.Bolanos-Garcia. Functional and Structural Characterisation of Riml From Bacillus Cereus, A New N Alpha-Acetyltransferase of Ribosomal Proteins That Was Wrongly Assigned As An Aminoglycosyltransferase. Int.J.Biol.Macromol. V. 263 30348 2024.
ISSN: ISSN 0141-8130
PubMed: 38395274
DOI: 10.1016/J.IJBIOMAC.2024.130348
Page generated: Thu Oct 31 09:58:51 2024

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