Zinc in PDB 8p2s: Cryo-Em Structure of the Anaerobic Ribonucleotide Reductase From Prevotella Copri in Its Dimeric, Atp/Dttp/Gtp-Bound State

The structure of Cryo-Em Structure of the Anaerobic Ribonucleotide Reductase From Prevotella Copri in Its Dimeric, Atp/Dttp/Gtp-Bound State also contains other interesting chemical elements:

Magnesium

(Mg)

2 atoms

The binding sites of Zinc atom in the Cryo-Em Structure of the Anaerobic Ribonucleotide Reductase From Prevotella Copri in Its Dimeric, Atp/Dttp/Gtp-Bound State (pdb code 8p2s). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Cryo-Em Structure of the Anaerobic Ribonucleotide Reductase From Prevotella Copri in Its Dimeric, Atp/Dttp/Gtp-Bound State, PDB code: 8p2s:

Zinc binding site 1 out of 1 in the Cryo-Em Structure of the Anaerobic Ribonucleotide Reductase From Prevotella Copri in Its Dimeric, Atp/Dttp/Gtp-Bound State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of the Anaerobic Ribonucleotide Reductase From Prevotella Copri in Its Dimeric, Atp/Dttp/Gtp-Bound State within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn804 b:79.2 occ:1.00 SG B:CYS698 2.3 72.9 1.0 SG B:CYS683 2.3 64.4 1.0 SG B:CYS695 2.3 71.5 1.0 SG B:CYS680 2.3 64.0 1.0 CB B:CYS683 2.8 64.4 1.0 CB B:CYS695 2.9 71.5 1.0 CB B:CYS698 3.2 72.9 1.0 CB B:CYS680 3.3 64.0 1.0 N B:CYS683 3.8 64.4 1.0 N B:CYS698 3.9 72.9 1.0 CA B:CYS683 3.9 64.4 1.0 CA B:CYS698 4.1 72.9 1.0 CB B:SER700 4.3 70.8 1.0 CA B:CYS695 4.4 71.5 1.0 N B:GLY699 4.5 71.9 1.0 N B:SER700 4.6 70.8 1.0 CA B:CYS680 4.7 64.0 1.0 CB B:LYS697 4.7 72.5 1.0 OD2 B:ASP682 4.7 66.1 1.0 C B:CYS698 4.8 72.9 1.0 CB B:ASP682 4.8 66.1 1.0 C B:ASP682 4.8 66.1 1.0 C B:LYS697 4.9 72.5 1.0 C B:CYS695 4.9 71.5 1.0 O B:CYS695 5.0 71.5 1.0

O.Bimai, I.Banerjee, I.Rozman Grinberg, P.Huang, D.Lundin, B.M.Sjoberg, D.T.Logan. Activity Modulation in Anaerobic Ribonucleotide Reductase: Nucleotide Binding to the Atp-Cone Mediates Long-Range Order-Disorder Transitions in the Active Site Elife 2023.
ISSN: ESSN 2050-084X