Zinc in PDB 8olc: SA11 Rotavirus Trypsinized Triple Layered Particle

The structure of SA11 Rotavirus Trypsinized Triple Layered Particle also contains other interesting chemical elements:

Calcium

(Ca)

26 atoms

The binding sites of Zinc atom in the SA11 Rotavirus Trypsinized Triple Layered Particle (pdb code 8olc). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 5 binding sites of Zinc where determined in the SA11 Rotavirus Trypsinized Triple Layered Particle, PDB code: 8olc:
Jump to Zinc binding site number: 1; 2; 3; 4; 5;

Zinc binding site 1 out of 5 in the SA11 Rotavirus Trypsinized Triple Layered Particle


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of SA11 Rotavirus Trypsinized Triple Layered Particle within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn401 b:30.0 occ:1.00 NE2 D:HIS153 2.2 82.1 1.0 NE2 C:HIS153 2.2 79.4 1.0 NE2 E:HIS153 2.4 84.3 1.0 CE1 C:HIS153 3.1 79.4 1.0 CE1 D:HIS153 3.1 82.1 1.0 CD2 D:HIS153 3.2 82.1 1.0 CE1 E:HIS153 3.2 84.3 1.0 CD2 C:HIS153 3.2 79.4 1.0 CD2 E:HIS153 3.4 84.3 1.0 ND1 C:HIS153 4.2 79.4 1.0 ND1 D:HIS153 4.2 82.1 1.0 CG D:HIS153 4.3 82.1 1.0 CG C:HIS153 4.3 79.4 1.0 ND1 E:HIS153 4.4 84.3 1.0 CG E:HIS153 4.5 84.3 1.0 CD D:LYS154 4.6 82.3 1.0 CD C:LYS154 4.7 78.9 1.0 CD E:LYS154 4.8 84.2 1.0

Zinc binding site 2 out of 5 in the SA11 Rotavirus Trypsinized Triple Layered Particle


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of SA11 Rotavirus Trypsinized Triple Layered Particle within 5.0Å range: probe atom residue distance (Å) B Occ F:Zn401 b:30.0 occ:1.00 NE2 G:HIS153 2.1 79.8 1.0 NE2 F:HIS153 2.2 78.8 1.0 NE2 H:HIS153 2.4 79.4 1.0 CE1 G:HIS153 3.0 79.8 1.0 CE1 F:HIS153 3.0 78.8 1.0 CD2 G:HIS153 3.1 79.8 1.0 CD2 F:HIS153 3.2 78.8 1.0 CE1 H:HIS153 3.3 79.4 1.0 CD2 H:HIS153 3.4 79.4 1.0 ND1 G:HIS153 4.1 79.8 1.0 ND1 F:HIS153 4.2 78.8 1.0 CG G:HIS153 4.2 79.8 1.0 CG F:HIS153 4.3 78.8 1.0 ND1 H:HIS153 4.4 79.4 1.0 CG H:HIS153 4.5 79.4 1.0 CD G:LYS154 4.9 79.7 1.0 CD F:LYS154 4.9 78.4 1.0

Zinc binding site 3 out of 5 in the SA11 Rotavirus Trypsinized Triple Layered Particle


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of SA11 Rotavirus Trypsinized Triple Layered Particle within 5.0Å range: probe atom residue distance (Å) B Occ I:Zn401 b:30.0 occ:1.00 NE2 K:HIS153 2.0 81.0 1.0 NE2 J:HIS153 2.1 81.0 1.0 NE2 I:HIS153 2.5 81.8 1.0 CD2 K:HIS153 3.0 81.0 1.0 CE1 J:HIS153 3.0 81.0 1.0 CE1 K:HIS153 3.0 81.0 1.0 CD2 J:HIS153 3.2 81.0 1.0 CD2 I:HIS153 3.4 81.8 1.0 CE1 I:HIS153 3.4 81.8 1.0 ND1 K:HIS153 4.1 81.0 1.0 CG K:HIS153 4.1 81.0 1.0 ND1 J:HIS153 4.1 81.0 1.0 CG J:HIS153 4.2 81.0 1.0 ND1 I:HIS153 4.5 81.8 1.0 CG I:HIS153 4.5 81.8 1.0 CD K:LYS154 4.6 81.4 1.0 CD J:LYS154 4.8 81.8 1.0

Zinc binding site 4 out of 5 in the SA11 Rotavirus Trypsinized Triple Layered Particle


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of SA11 Rotavirus Trypsinized Triple Layered Particle within 5.0Å range: probe atom residue distance (Å) B Occ L:Zn401 b:30.0 occ:1.00 NE2 N:HIS153 2.2 82.0 1.0 NE2 M:HIS153 2.3 81.0 1.0 NE2 L:HIS153 2.4 81.6 1.0 CE1 N:HIS153 3.1 82.0 1.0 CE1 M:HIS153 3.2 81.0 1.0 CD2 N:HIS153 3.2 82.0 1.0 CD2 M:HIS153 3.3 81.0 1.0 CE1 L:HIS153 3.3 81.6 1.0 CD2 L:HIS153 3.3 81.6 1.0 ND1 N:HIS153 4.2 82.0 1.0 CG N:HIS153 4.3 82.0 1.0 ND1 M:HIS153 4.3 81.0 1.0 CG M:HIS153 4.4 81.0 1.0 ND1 L:HIS153 4.4 81.6 1.0 CG L:HIS153 4.4 81.6 1.0 CD N:LYS154 5.0 81.7 1.0 CD M:LYS154 5.0 81.2 1.0 CD L:LYS154 5.0 82.3 1.0

Zinc binding site 5 out of 5 in the SA11 Rotavirus Trypsinized Triple Layered Particle


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of SA11 Rotavirus Trypsinized Triple Layered Particle within 5.0Å range: probe atom residue distance (Å) B Occ O:Zn401 b:30.0 occ:1.00 NE2 O:HIS153 2.0 82.8 1.0 CE1 O:HIS153 3.0 82.8 1.0 CD2 O:HIS153 3.0 82.8 1.0 ND1 O:HIS153 4.1 82.8 1.0 CG O:HIS153 4.1 82.8 1.0 CD O:LYS154 4.8 84.1 1.0

D.Asensio-Cob, C.Perez-Mata, J.Gomez-Blanco, J.Vargas, J.M.Rodriguez, D.Luque. Structural Basis of Rotavirus Spike Proteolytic Activation To Be Published.