Zinc in PDB 8k31: The Complex of WRKY33 C Terminal Dbd and SIB1

The binding sites of Zinc atom in the The Complex of WRKY33 C Terminal Dbd and SIB1 (pdb code 8k31). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the The Complex of WRKY33 C Terminal Dbd and SIB1, PDB code: 8k31:

Zinc binding site 1 out of 1 in the The Complex of WRKY33 C Terminal Dbd and SIB1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Complex of WRKY33 C Terminal Dbd and SIB1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn501 b:0.0 occ:1.00 NE2 B:HIS418 2.0 0.0 1.0 ND1 B:HIS416 2.0 0.0 1.0 SG B:CYS387 2.2 0.0 1.0 SG B:CYS392 2.3 0.0 1.0 CE1 B:HIS418 2.9 0.0 1.0 CE1 B:HIS416 2.9 0.0 1.0 HE1 B:HIS416 3.0 0.0 1.0 HB B:THR389 3.0 0.0 1.0 HB2 B:CYS387 3.1 0.0 1.0 HE1 B:HIS418 3.1 0.0 1.0 CB B:CYS387 3.1 0.0 1.0 CG B:HIS416 3.1 0.0 1.0 CD2 B:HIS418 3.2 0.0 1.0 HB3 B:HIS416 3.3 0.0 1.0 CB B:CYS392 3.3 0.0 1.0 HB3 B:CYS392 3.3 0.0 1.0 HB B:VAL394 3.4 0.0 1.0 HB3 B:CYS387 3.5 0.0 1.0 HB2 B:CYS392 3.5 0.0 1.0 HD2 B:HIS418 3.6 0.0 1.0 CB B:HIS416 3.7 0.0 1.0 HA B:HIS416 4.0 0.0 1.0 CB B:THR389 4.1 0.0 1.0 ND1 B:HIS418 4.1 0.0 1.0 NE2 B:HIS416 4.1 0.0 1.0 CD2 B:HIS416 4.3 0.0 1.0 H B:THR389 4.3 0.0 1.0 CG B:HIS418 4.3 0.0 1.0 HG22 B:VAL394 4.3 0.0 1.0 HG23 B:VAL394 4.3 0.0 1.0 HG1 B:THR389 4.3 0.0 1.0 CB B:VAL394 4.4 0.0 1.0 HG21 B:THR389 4.4 0.0 1.0 CA B:HIS416 4.4 0.0 1.0 CA B:CYS387 4.5 0.0 1.0 OG1 B:THR389 4.6 0.0 1.0 CG2 B:VAL394 4.6 0.0 1.0 HB2 B:HIS416 4.6 0.0 1.0 H B:VAL394 4.6 0.0 1.0 HA B:CYS387 4.6 0.0 1.0 HG11 B:VAL394 4.7 0.0 1.0 CA B:CYS392 4.7 0.0 1.0 CG2 B:THR389 4.7 0.0 1.0 HD2 B:TYR365 4.8 0.0 1.0 HB3 B:TYR365 4.8 0.0 1.0 HG22 B:THR389 4.8 0.0 1.0 HA B:CYS392 4.9 0.0 1.0 HE2 B:HIS416 4.9 0.0 1.0 CG1 B:VAL394 4.9 0.0 1.0 HD1 B:HIS418 5.0 0.0 1.0 HG12 B:VAL394 5.0 0.0 1.0 O B:CYS392 5.0 0.0 1.0

X.Dong, L.Yu, Q.Zhang, J.Yang, Z.Gong, X.Niu, H.Li, X.Zhang, M.Liu, C.Jin, Y.Hu. Structural Basis For the Regulation of Plant Transcription Factor WRKY33 By the Vq Protein SIB1. Commun Biol V. 7 561 2024.
ISSN: ESSN 2399-3642
PubMed: 38734744
DOI: 10.1038/S42003-024-06258-7