Zinc in PDB 8gkh: Structure of the Spizellomyces Punctatus Fanzor (Spufz) in Complex with Omega Rna and Target Dna

The structure of Structure of the Spizellomyces Punctatus Fanzor (Spufz) in Complex with Omega Rna and Target Dna also contains other interesting chemical elements:

Magnesium

(Mg)

2 atoms

The binding sites of Zinc atom in the Structure of the Spizellomyces Punctatus Fanzor (Spufz) in Complex with Omega Rna and Target Dna (pdb code 8gkh). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of the Spizellomyces Punctatus Fanzor (Spufz) in Complex with Omega Rna and Target Dna, PDB code: 8gkh:

Zinc binding site 1 out of 1 in the Structure of the Spizellomyces Punctatus Fanzor (Spufz) in Complex with Omega Rna and Target Dna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of the Spizellomyces Punctatus Fanzor (Spufz) in Complex with Omega Rna and Target Dna within 5.0Å range: probe atom residue distance (Å) B Occ P:Zn703 b:59.3 occ:1.00 SG P:CYS551 2.3 57.1 1.0 SG P:CYS586 2.3 52.4 1.0 SG P:CYS591 2.3 44.3 1.0 SG P:CYS548 2.3 51.0 1.0 CB P:CYS548 3.0 42.1 1.0 CB P:CYS586 3.3 38.3 1.0 CB P:CYS551 3.5 43.6 1.0 CB P:CYS591 3.7 41.1 1.0 N P:CYS551 4.0 27.9 1.0 CB P:ASN588 4.2 42.5 1.0 CA P:CYS551 4.3 34.9 1.0 CA P:CYS548 4.4 40.0 1.0 O P:CYS548 4.6 57.4 1.0 CB P:ARG550 4.6 34.1 1.0 C P:ARG550 4.7 36.6 1.0 C P:CYS548 4.7 44.8 1.0 CA P:CYS586 4.7 29.9 1.0 ND2 P:ASN588 4.8 45.9 1.0 CG P:ASN588 4.9 45.8 1.0 N P:ARG550 5.0 29.8 1.0 CA P:CYS591 5.0 37.9 1.0

M.Saito, P.Xu, G.Faure, S.Maguire, S.Kannan, H.Altae-Tran, S.Vo, A.Desimone, R.K.Macrae, F.Zhang. Fanzor Is A Eukaryotic Programmable Rna-Guided Endonuclease. Nature 2023.
ISSN: ESSN 1476-4687
PubMed: 37380027
DOI: 10.1038/S41586-023-06356-2