Zinc in PDB 9rjs: Structure of the Bacteriophage Phikz Non-Virion Rna Polymerase Bound to An Analogue of Its Promoter

The binding sites of Zinc atom in the Structure of the Bacteriophage Phikz Non-Virion Rna Polymerase Bound to An Analogue of Its Promoter (pdb code 9rjs). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of the Bacteriophage Phikz Non-Virion Rna Polymerase Bound to An Analogue of Its Promoter, PDB code: 9rjs:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Structure of the Bacteriophage Phikz Non-Virion Rna Polymerase Bound to An Analogue of Its Promoter


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of the Bacteriophage Phikz Non-Virion Rna Polymerase Bound to An Analogue of Its Promoter within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn501 b:188.0 occ:1.00 SG A:CYS60 2.3 142.3 1.0 SG A:CYS73 2.3 126.5 1.0 SG A:CYS76 2.3 151.3 1.0 SG A:CYS58 2.3 137.8 1.0 CB A:CYS73 3.3 129.9 1.0 CB A:CYS60 3.4 129.6 1.0 CB A:CYS58 3.4 127.7 1.0 CB A:CYS76 3.4 141.6 1.0 N A:CYS60 3.5 129.1 1.0 CB A:ALA62 3.7 112.7 1.0 N A:CYS76 3.8 143.3 1.0 CA A:CYS60 3.8 126.8 1.0 N A:ALA62 4.0 116.9 1.0 C A:CYS60 4.1 129.6 1.0 CA A:CYS76 4.2 140.5 1.0 N A:ARG61 4.2 127.2 1.0 N A:ASP59 4.3 130.1 1.0 CA A:ALA62 4.4 111.5 1.0 CB A:ILE75 4.5 126.5 1.0 CA A:CYS58 4.6 124.5 1.0 C A:CYS58 4.7 125.7 1.0 C A:ASP59 4.7 130.6 1.0 C A:ILE75 4.7 130.9 1.0 O A:CYS60 4.7 127.0 1.0 CA A:CYS73 4.8 129.8 1.0 N A:ILE75 4.9 130.8 1.0 CA A:ILE75 4.9 127.4 1.0 CD1 A:ILE63 5.0 108.4 1.0 CA A:ASP59 5.0 131.7 1.0

Zinc binding site 2 out of 2 in the Structure of the Bacteriophage Phikz Non-Virion Rna Polymerase Bound to An Analogue of Its Promoter


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of the Bacteriophage Phikz Non-Virion Rna Polymerase Bound to An Analogue of Its Promoter within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn701 b:145.1 occ:1.00 SG D:CYS288 2.3 105.6 1.0 SG D:CYS353 2.3 106.3 1.0 SG D:CYS350 2.3 86.8 1.0 SG D:CYS341 2.3 90.0 1.0 CB D:CYS341 3.4 81.0 1.0 CB D:CYS350 3.4 78.8 1.0 CB D:CYS353 3.4 85.6 1.0 CB D:CYS288 3.4 100.4 1.0 CA D:CYS341 3.6 75.9 1.0 N D:CYS350 4.0 77.7 1.0 CA D:CYS350 4.2 78.3 1.0 N D:CYS353 4.2 85.7 1.0 N D:ASN342 4.3 94.9 1.0 N D:CYS288 4.3 95.8 1.0 NH2 D:ARG336 4.3 84.6 1.0 CA D:CYS353 4.4 81.2 1.0 CA D:CYS288 4.5 97.6 1.0 C D:CYS341 4.5 85.1 1.0 OG1 D:THR290 4.7 97.9 1.0 N D:CYS341 4.7 79.5 1.0 C D:CYS350 4.7 77.4 1.0 O D:CYS350 4.8 82.1 1.0

N.De Martin Garrido, C.S.Chen, K.Ramlaul, C.H.S.Aylett, M.Yakunina. Structure of the Bacteriophage Phikz Non-Virion Rna Polymerase Transcribing From Its Promoter P119L. J.Mol.Biol. V. 436 68713 2024.
ISSN: ESSN 1089-8638
PubMed: 39029888
DOI: 10.1016/J.JMB.2024.168713