Zinc in PDB 8eup: YTM1 Associated 60S Nascent Ribosome State 1A

All present enzymatic activity of YTM1 Associated 60S Nascent Ribosome State 1A:
3.6.4.13;

The binding sites of Zinc atom in the YTM1 Associated 60S Nascent Ribosome State 1A (pdb code 8eup). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the YTM1 Associated 60S Nascent Ribosome State 1A, PDB code: 8eup:

Zinc binding site 1 out of 1 in the YTM1 Associated 60S Nascent Ribosome State 1A


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of YTM1 Associated 60S Nascent Ribosome State 1A within 5.0Å range: probe atom residue distance (Å) B Occ j:Zn101 b:47.5 occ:1.00 SG j:CYS22 2.3 37.5 1.0 SG j:CYS19 2.3 57.5 1.0 SG j:CYS34 2.3 41.2 1.0 SG j:CYS37 2.3 41.6 1.0 CB j:CYS19 2.9 40.5 1.0 CB j:CYS22 2.9 34.9 1.0 CB j:CYS34 2.9 40.0 1.0 CB j:CYS37 3.8 32.7 1.0 N j:CYS22 3.9 38.0 1.0 CA j:CYS22 4.0 34.7 1.0 N j:CYS37 4.1 39.9 1.0 CB j:TYR39 4.2 34.6 1.0 CA j:CYS19 4.4 42.1 1.0 CA j:CYS37 4.4 32.1 1.0 CA j:CYS34 4.4 42.9 1.0 N j:TYR39 4.8 37.4 1.0 C j:CYS37 4.8 33.0 1.0 CB j:CYS36 4.8 34.6 1.0 O j:LYS24 4.8 34.5 1.0 CG j:TYR39 4.9 38.0 1.0 C j:CYS22 4.9 32.6 1.0 C j:CYS36 4.9 40.4 1.0 C j:CYS19 4.9 45.8 1.0 C j:CYS34 5.0 42.6 1.0 N j:GLY23 5.0 33.0 1.0

I.Ugolini, S.Bilokapic, M.Ferrolino, J.Teague, Y.Yan, X.Zhou, A.Deshmukh, M.White, R.W.Kriwacki, M.Halic. Chromatin Localization of Nucleophosmin Organizes Ribosome Biogenesis. Mol.Cell V. 82 4443 2022.
ISSN: ISSN 1097-2765
PubMed: 36423630
DOI: 10.1016/J.MOLCEL.2022.10.033