Zinc in PDB 8dar: Saccharomyces Cerevisiae UFD1/NPL4/CDC48 Complex Unbound But in the Presence of Sumo-Ubiquitin(K48POLYUB)-Meos and Atp

All present enzymatic activity of Saccharomyces Cerevisiae UFD1/NPL4/CDC48 Complex Unbound But in the Presence of Sumo-Ubiquitin(K48POLYUB)-Meos and Atp:
3.6.4.6;

The binding sites of Zinc atom in the Saccharomyces Cerevisiae UFD1/NPL4/CDC48 Complex Unbound But in the Presence of Sumo-Ubiquitin(K48POLYUB)-Meos and Atp (pdb code 8dar). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Saccharomyces Cerevisiae UFD1/NPL4/CDC48 Complex Unbound But in the Presence of Sumo-Ubiquitin(K48POLYUB)-Meos and Atp, PDB code: 8dar:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Saccharomyces Cerevisiae UFD1/NPL4/CDC48 Complex Unbound But in the Presence of Sumo-Ubiquitin(K48POLYUB)-Meos and Atp


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Saccharomyces Cerevisiae UFD1/NPL4/CDC48 Complex Unbound But in the Presence of Sumo-Ubiquitin(K48POLYUB)-Meos and Atp within 5.0Å range: probe atom residue distance (Å) B Occ G:Zn601 b:61.5 occ:1.00 NE2 G:HIS139 2.0 45.0 1.0 SG G:CYS148 2.2 38.9 1.0 SG G:CYS137 2.3 47.2 1.0 SG G:CYS145 2.4 40.3 1.0 CD2 G:HIS139 2.8 45.0 1.0 CB G:CYS137 3.1 47.2 1.0 CE1 G:HIS139 3.1 45.0 1.0 N G:CYS145 3.3 40.3 1.0 CB G:CYS148 3.5 38.9 1.0 CB G:CYS145 3.8 40.3 1.0 CA G:CYS137 4.0 47.2 1.0 CA G:MET144 4.0 37.9 1.0 CG G:HIS139 4.0 45.0 1.0 CA G:CYS145 4.1 40.3 1.0 C G:MET144 4.1 37.9 1.0 ND1 G:HIS139 4.1 45.0 1.0 N G:CYS148 4.2 38.9 1.0 CA G:CYS148 4.5 38.9 1.0 N G:GLU146 4.6 37.9 1.0 CB G:MET144 4.7 37.9 1.0 N G:TYR147 4.8 39.0 1.0 C G:CYS145 4.9 40.3 1.0 C G:CYS137 4.9 47.2 1.0 N G:LYS138 5.0 48.7 1.0 C G:TYR147 5.0 39.0 1.0 N G:CYS137 5.0 47.2 1.0

Zinc binding site 2 out of 2 in the Saccharomyces Cerevisiae UFD1/NPL4/CDC48 Complex Unbound But in the Presence of Sumo-Ubiquitin(K48POLYUB)-Meos and Atp


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Saccharomyces Cerevisiae UFD1/NPL4/CDC48 Complex Unbound But in the Presence of Sumo-Ubiquitin(K48POLYUB)-Meos and Atp within 5.0Å range: probe atom residue distance (Å) B Occ G:Zn602 b:50.1 occ:1.00 NE2 G:HIS208 2.0 45.9 1.0 SG G:CYS216 2.2 38.7 1.0 SG G:CYS219 2.3 37.7 1.0 SG G:CYS204 2.3 52.0 1.0 CE1 G:HIS208 2.8 45.9 1.0 CB G:CYS204 3.0 52.0 1.0 CD2 G:HIS208 3.1 45.9 1.0 CB G:CYS219 3.3 37.7 1.0 CB G:CYS216 3.4 38.7 1.0 N G:CYS216 3.6 38.7 1.0 N G:CYS219 3.9 37.7 1.0 ND1 G:HIS208 4.0 45.9 1.0 CA G:CYS216 4.0 38.7 1.0 CA G:CYS219 4.2 37.7 1.0 CG G:HIS208 4.2 45.9 1.0 CB G:ASN206 4.3 49.5 1.0 CA G:CYS204 4.4 52.0 1.0 C G:CYS216 4.6 38.7 1.0 O G:CYS216 4.6 38.7 1.0 C G:ILE215 4.6 38.8 1.0 CB G:LYS218 4.8 38.2 1.0 N G:ASN206 4.8 49.5 1.0 C G:LYS218 4.8 38.2 1.0 C G:CYS204 4.8 52.0 1.0 CA G:ILE215 4.9 38.8 1.0 N G:LYS218 4.9 38.2 1.0 N G:HIS205 5.0 53.9 1.0

H.G.Lee, A.A.Lemmon, C.D.Lima. UFD1 Interactions with Sumo Enhance Unfolding of Sumo-Polyubiquitin-Conjugated Substrates By the UFD1/NPL4/CDC48 Complex To Be Published.